BS23527.complete Sequence
2336 bp assembled on 2011-02-18
GenBank Submission: KX806030
> BS23527.complete
GAAGTTATCAGTCGACATGAGTCGTAATCAAAACGAAAGCAACCTCCTTG
ATATCAATGAAGATCTGCCTTTTGCTCTTGCTCTGCCCCCCGTCTCAATG
GATTCGTTGCAGCTGAACGCAGACGGCAATAGCCCCGAGGACAAGACGCT
CGGTATTGGCCGTAAAACCATTTTGAATGCGCACACAAAATCTTTGGCTC
CCATTGTGAGTGACGAGGCCCTGAACACGCTAAATGAGCTCCGCGAGCAA
AATCTTCTCTGCGACGCCCAGATTTCTGTGGGGGAGGATGTGTTCAATGT
ACATCGTGCAATAATGTGTTCATGTAGCTCATACTTTCGAGCTCAATTCA
CAGGGTTTAACGCTGACACTCCCGGATGTGTAGATGGGTCAGATGCAAAA
AAAAACAATAATTTTATTCATATCCCCGGCGTGAGTTCATGTATAATGAA
CTGTGTAATACAGTACGCTTACCTGCGTCAAACAAACATCTCCGAGAGCA
ATGTTCATGAGTTACTTATCTGCGCTGACTACGTTGGCATGGTAGGTTTA
GTTAAGAAATGTAAAGACTACCTCGGTCGCATACTCACCCCCGAAAACTG
TGTCAGTATTATGGGATTCGCACGGTTCCGATTTTTGGAGGACCTTCACC
TGAAGGCCAGGAACTACACTCTAAGGTACTTTACTGAAGTTGCATATCGT
AATATTGACATACTAGATATGTCAGCTGAAGACTTTTACAGTATTATTAG
CGATGATGAGTTAAATACCCGCGAAGAGGATCACGTATGGAAATTGTGTG
TTAAATGGATCGACCGTAATCCAGAAAGCCGCAAGCGCCATGTTGCCCAT
CTAATGACTGGGGTACGACTGGGCCTAATGACTCCAAAGTGCTTCATGGA
AGAGGTTAAGGAACACCCATACGTCTTAGAATGTGAAGCCGCTAAGCCAC
TGATCGTTGACACCTTTAAATTTATGTACGACCTGGACTTTTTGAATCCT
CAGGCAGACGAGCTTACCACTCCACCACTGGCAATGCCAAGGCTACCGCA
CGAAGTCATCTTTGCCATAGGCGGCTGGAGCGGTGGCACCTCAAAAGGTT
GCATCGAGACTTATGACACGAGGGCAGATAGATGGGTAACCATTAACGCA
GAGGATCCTGCTGGTCCCCGTGCGTATCATGGAACCGCAGTGCTGGGTTT
CAAAATATTCTCGATTGGCGGATATGATGGCGTAGAGTATTTCAACACAT
GCCGAGTTTTTGACGCGGTAAAAAAAAAATGGAACGAAATCGCACCGATG
CATTGCAGGCGCTGCTACGTAAGTGTAACAGAGTTAAATGGAATGATATA
TGCAATCGGCGGCTACGACGGGCATAACCGGCTGAACACTGTGGAGCGGT
ATAATCCAAGGACCAACCAATGGTCCGTTATCCCACCAATGAACATGCAA
CGCTCTGATGCCAGCGCCTGTACTTTGCAAGAACGCATATATGCTACAGG
GGGATTTAACGGCCAGGAATGCCTAGACAGCGCCGAGTATTATGACCCTG
TAACCAACGTTTGGACTAGAATACCTAACATGAATCATCGTCGGTCTGGA
GTGAGCTGCGTGGCCTTTAGAAACCAGCTTTACGTTATCGGCGGCTTTAA
CGGCACAGCGCGTCTATCTACCGGAGAACGCTTTGATCCGGACACGCAAA
CTTGGCACTTCATTCGTGAAATGAACCACTCCCGCAGTAACTTCGGGCTA
GAGATTATTGACGATATGATCTTCGCTATAGGCGGCTTTAACGGCGTCTC
GACGATCTCTCATACGGAATGCTATGTAGCCGAAACAGACGAATGGATGG
AAGCCACAGATATGAATATTGTTCGTTCCGCCTTGTCTGCCAATAACATA
GCTGGGCTTCCAAACAAGCGAGACTATATACACAAAGAGCGGGATCGCCT
GATGGAGGAGCGGCGTCAGCGTCTTATGGCAACCGCCATGGCTCGGGAGA
ATGTAGGACACGGCAATGCCTCGCAGATGTTAGTGGAACACAATGACGGA
GCCATGGACGACTACGAAAGTCCTGATGAAGTAGATGAGACTGATGAGCA
AGAGCAATCAGCACGCATAAGCCGGACTATACCACCCTCTGTAGGGCTTC
CAAACCCAGCAGTTGCTGCTGAAACGATACGAGATCAATCTCAATTGGTG
TCCACTGCTCAACTTAATAGAGTAATGGAGGATCGCGGTATGGACAACAA
TAGGAGCAATCGTGTGCAACTGCGTAATCAACGCCATGGCTCGCATCATG
AAATTCGTCGTCGTACATAGAAGCTTTCTAGACCAT
BS23527.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:45:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| klhl10-RB | 2304 | CG12423-PB | 1..2304 | 17..2320 | 11505 | 100 | Plus |
| klhl10-RA | 2304 | CG12423-PA | 1..2304 | 17..2320 | 11505 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:45:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| klhl10-RB | 2779 | CG12423-RB | 156..2459 | 17..2320 | 11505 | 100 | Plus |
| klhl10-RA | 2706 | CG12423-RA | 181..2484 | 17..2320 | 11505 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:44:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| U | 3151297 | U | 170267..171576 | 1011..2320 | 6550 | 100 | Plus |
| U | 3151297 | U | 792215..793524 | 2320..1011 | 6550 | 100 | Minus |
| U | 3151297 | U | 143312..143634 | 17..339 | 1600 | 99.7 | Plus |
| U | 3151297 | U | 143686..143973 | 339..626 | 1440 | 100 | Plus |
| U | 3151297 | U | 144025..144290 | 624..889 | 1330 | 100 | Plus |
| U | 3151297 | U | 170084..170208 | 888..1012 | 625 | 100 | Plus |
| U | 3151297 | U | 793583..793707 | 1012..888 | 625 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 12:45:00 has no hits.
BS23527.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-18 10:40:18 Download gff for
BS23527.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| klhl10-RB | 156..2459 | 17..2320 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:24:09 Download gff for
BS23527.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| klhl10-RA | 181..2484 | 17..2320 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:03:41 Download gff for
BS23527.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| klhl10-RA | 181..2484 | 17..2320 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:03:41 Download gff for
BS23527.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| U | 792215..793522 | 1013..2320 | 100 | <- | Minus |
| U | 793583..793707 | 888..1012 | 100 | == | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:24:09 Download gff for
BS23527.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ArmU | 5531634..5532941 | 1013..2320 | 100 | <- | Minus |
| ArmU | 5533002..5533126 | 888..1012 | 100 | == | Minus |
BS23527.pep Sequence
Translation from 16 to 2319
> BS23527.pep
MSRNQNESNLLDINEDLPFALALPPVSMDSLQLNADGNSPEDKTLGIGRK
TILNAHTKSLAPIVSDEALNTLNELREQNLLCDAQISVGEDVFNVHRAIM
CSCSSYFRAQFTGFNADTPGCVDGSDAKKNNNFIHIPGVSSCIMNCVIQY
AYLRQTNISESNVHELLICADYVGMVGLVKKCKDYLGRILTPENCVSIMG
FARFRFLEDLHLKARNYTLRYFTEVAYRNIDILDMSAEDFYSIISDDELN
TREEDHVWKLCVKWIDRNPESRKRHVAHLMTGVRLGLMTPKCFMEEVKEH
PYVLECEAAKPLIVDTFKFMYDLDFLNPQADELTTPPLAMPRLPHEVIFA
IGGWSGGTSKGCIETYDTRADRWVTINAEDPAGPRAYHGTAVLGFKIFSI
GGYDGVEYFNTCRVFDAVKKKWNEIAPMHCRRCYVSVTELNGMIYAIGGY
DGHNRLNTVERYNPRTNQWSVIPPMNMQRSDASACTLQERIYATGGFNGQ
ECLDSAEYYDPVTNVWTRIPNMNHRRSGVSCVAFRNQLYVIGGFNGTARL
STGERFDPDTQTWHFIREMNHSRSNFGLEIIDDMIFAIGGFNGVSTISHT
ECYVAETDEWMEATDMNIVRSALSANNIAGLPNKRDYIHKERDRLMEERR
QRLMATAMARENVGHGNASQMLVEHNDGAMDDYESPDEVDETDEQEQSAR
ISRTIPPSVGLPNPAVAAETIRDQSQLVSTAQLNRVMEDRGMDNNRSNRV
QLRNQRHGSHHEIRRRT*
BS23527.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:29:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| klhl10-PB | 767 | CG12423-PB | 1..767 | 1..767 | 4088 | 100 | Plus |
| klhl10-PA | 767 | CG12423-PA | 1..767 | 1..767 | 4088 | 100 | Plus |
| dbo-PB | 620 | CG6224-PB | 48..620 | 55..646 | 786 | 32 | Plus |
| dbo-PA | 623 | CG6224-PA | 48..595 | 55..620 | 785 | 33 | Plus |
| CG15097-PC | 617 | CG15097-PC | 24..599 | 27..625 | 695 | 28.7 | Plus |
