BS23538.complete Sequence
1016 bp assembled on 2011-02-07
GenBank Submission: KX802834
> BS23538.complete
GAAGTTATCAGTCGACATGCCCCCACTTGAATTAAACATGAATTTGGCCC
TAAATAAGACTTTCCAGAAGCGTGGATGTCAAATTCTTGGCCTCAACAAG
TACGGTATACAGCAGTGGCTGAAGACAATCGACACGATCATATTCGATGG
AAACGGTGTCCTGTGGAGCCACGGCAAGGTCCTTGAAAATGCAGCCGAGA
CGTTTAACGCACTGCGTGCCATGGGAAAGAAGGCCTTTATTTGCACCAAT
AACTCAGTGACTTCGGTCGAGGGCATCTGCAAGTATGCCCAGGAAATGGG
TTTCTTGGTGGCCAAGAATGAGATCCTTTCCTCGGTCCAAACTTTAGCCA
AATTTATGAAGGAGAAAAAGTTTAAGAAAAAGTGCTACGTAGTGGGCGGC
CAGGGAATCGTCGACGAATTAAAGTTGGTAGGAATCGAGTCCCTGCCCTT
GGATCATTCCTCTCTGCAGGGCTTCTCTATGCCAGATCACATCCACAGTA
TCTACTTGGATCCCAATGTGGGTGCTGTGGTCGTGGGATCTGACAAGGAT
TTTAATACAATCAAGCTGACAAAGGCGTGTTGCTATCTCAGAGACAGCGA
GGTAATGTTTGTGGCCACAAGTCGCGATGCGGCACTTCCGGCGGCTCCAG
GACGAATGGTTCCTTCCGCCGGAGTGATGGTGGCTGCCATTCAGGCGGCC
AGTCAACGTATGCCCTTCACTTGTGGAAAACCCAATCCGTACATGTGCAT
CGACTTGATGCAAAAGGGAGTTATTCAGCCGGACAGGACTTTGATTATAG
GAGACACCATGTGCACAGATATCCTTTTGGGCTACAAGTGTGGCTTCCAA
ACCCTTTTGGTGGGCACCGGGGTTAACAGCTATCAGGATGCCATTGAGGC
TCAGGGATCTAAGGCTCCATTACTATATCAGCAAGTTCCTGATCTATATA
TGCCCAAACTATCCAATCTGTTGCCATTTTTATCTTCTCGAAATAGATAA
AAGCTTTCTAGACCAT
BS23538.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:17:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32487-RA | 963 | CG32487-PA | 1..963 | 38..1000 | 4740 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:17:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32487-RA | 1040 | CG32487-RA | 24..1004 | 20..1000 | 4830 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:17:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3016446..3017233 | 807..20 | 3925 | 99.9 | Minus |
| 3L | 28110227 | 3L | 3016186..3016382 | 1000..804 | 910 | 97.5 | Minus |
Blast to na_te.dros performed 2014-11-26 22:17:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Idefix | 7411 | Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). | 5302..5334 | 348..380 | 111 | 81.8 | Plus |
BS23538.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-07 12:15:38 Download gff for
BS23538.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32487-RA | 21..1002 | 17..998 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:53:09 Download gff for
BS23538.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32487-RA | 21..1002 | 17..998 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:56:36 Download gff for
BS23538.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32487-RA | 21..1002 | 17..998 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:56:36 Download gff for
BS23538.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3016188..3016378 | 808..998 | 97 | <- | Minus |
| 3L | 3016446..3017236 | 17..807 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:53:09 Download gff for
BS23538.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3016188..3016378 | 808..998 | 97 | <- | Minus |
| arm_3L | 3016446..3017236 | 17..807 | 99 | | Minus |
BS23538.pep Sequence
Translation from 16 to 999
> BS23538.pep
MPPLELNMNLALNKTFQKRGCQILGLNKYGIQQWLKTIDTIIFDGNGVLW
SHGKVLENAAETFNALRAMGKKAFICTNNSVTSVEGICKYAQEMGFLVAK
NEILSSVQTLAKFMKEKKFKKKCYVVGGQGIVDELKLVGIESLPLDHSSL
QGFSMPDHIHSIYLDPNVGAVVVGSDKDFNTIKLTKACCYLRDSEVMFVA
TSRDAALPAAPGRMVPSAGVMVAAIQAASQRMPFTCGKPNPYMCIDLMQK
GVIQPDRTLIIGDTMCTDILLGYKCGFQTLLVGTGVNSYQDAIEAQGSKA
PLLYQQVPDLYMPKLSNLLPFLSSRNR*
BS23538.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:01:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32487-PA | 320 | CG32487-PA | 1..320 | 8..327 | 1662 | 100 | Plus |
| CG5567-PA | 330 | CG5567-PA | 18..320 | 18..320 | 611 | 40.5 | Plus |
| CG32488-PB | 307 | CG32488-PB | 12..306 | 26..322 | 564 | 39.7 | Plus |
| CG32488-PA | 307 | CG32488-PA | 12..306 | 26..322 | 564 | 39.7 | Plus |
| CG11291-PA | 308 | CG11291-PA | 12..306 | 26..322 | 461 | 35.9 | Plus |
