BS23539.complete Sequence
1226 bp assembled on 2011-01-25
GenBank Submission: KX801560
> BS23539.complete
GAAGTTATCAGTCGACATGGAAAACCCAATAAACTTCAAGGATATACCCT
CCGAGATGCCGCAGCCAAAGCGCATTCAACTTGAGGGCGAGACTTCGGTG
GCCGAAGCCATAAACTTCCTGAAGACGCAATGCGATACGCGCAAGGAGCA
CAAGCCTGAGGAGTTTCAGCAGGATGGACCAACCGTAGCGGACGAGTTAA
ACGCTCGCCTGGCCATGGTTCATGTGCGCGAGACTCGTGCCAAACGCATT
CGCCGCTTAGTTAAGTTTTCCCCCAATGAGACGCAAGCATTGTACAGGTT
CATCTGTGTCTGTCCCCGCTACCATCCTTGCTATGTGCCCTGCCAACACA
CGGGACAAATAATCATCGACCGGGACGTGTTGTCCCGCGAGGAACACATA
TGTTTTCTAGCTACACCCAAGAAGGACTTCTCCTCACCCCAGTTGGCCAA
ACAGGCGCGCTACTACACCAAAAAGATCTACGTTAACCAATGTACAGCAC
GGGTTGAACGACTTGCCGATCCTCACCCAATGCGAGTGAGTGACACATAC
AATTTCTTTAAGGACTACCTCTCGCCTCGTCATATAGCGGCTCTAGAGAA
CCAGATGAAACCCAAACCTCCGGTAGAAGCCATGTCAATGGAGAAGGCGC
TGGAATACATGGAGGAGGAGATGCGTCAGCGCAAGGCAGCGAAGCGTGTC
CAAAAGCGACGATGCAAGGGTCTAAAAAAACGAATCATTTTGCGCCAGCG
CAAGCAGATGCAAAAGATAATTTGCGTACTGTTCGAGGAAATGAAGGACT
TTCTACTCAACGATCAGTTTATTGTTGACGAGAACTCCCCTCTATGTTGC
GTAATTCTTGAGAGACTTCGAGAATTTACAGATCAAGAATTCTATACGAC
AAGTAATTTGCAAGAGTATCAGAGGATATTGGCCAACAACCTAACCGTTT
GGGTCAACAAGTTCATATCAAACTTAAACATTTACTTGACACCTCAGCAA
ATACCTGTAAAACGACAGATGATGGCAGAGAACGATCCCGAACAGTTTGT
GCCCTTGTCAGATTTCATTTCTGTATCCGATGAGGCGGATGCAGAGGAAA
TGATGAACGATGTCGAGCACGGAGCCGCTGAATATGACGACTATGGATAT
GGGGAGGACTACTTGCCCGACGTTCTCAATACGGATATATCGGAGGAAAC
AATAATCTAAAAGCTTTCTAGACCAT
BS23539.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:34:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rcd7-RB | 1194 | CG14098-PB | 1..1194 | 17..1210 | 5970 | 100 | Plus |
| Rcd7-RA | 1194 | CG14098-PA | 1..1194 | 17..1210 | 5970 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:34:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rcd7-RB | 1466 | CG14098-RB | 80..1274 | 16..1210 | 5975 | 100 | Plus |
| Rcd7-RA | 1827 | CG14098-RA | 441..1635 | 16..1210 | 5975 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:34:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19546131..19546716 | 296..881 | 2930 | 100 | Plus |
| 3L | 28110227 | 3L | 19546771..19547101 | 880..1210 | 1655 | 100 | Plus |
| 3L | 28110227 | 3L | 19545683..19545966 | 16..299 | 1420 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:34:35 has no hits.
BS23539.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:16:13 Download gff for
BS23539.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rcd7-RB | 81..1272 | 17..1208 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:00:21 Download gff for
BS23539.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rcd7-RA | 442..1633 | 17..1208 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:07:41 Download gff for
BS23539.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rcd7-RA | 442..1633 | 17..1208 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:07:41 Download gff for
BS23539.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19545684..19545964 | 17..297 | 100 | -> | Plus |
| 3L | 19546133..19546716 | 298..881 | 100 | -> | Plus |
| 3L | 19546773..19547099 | 882..1208 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:00:21 Download gff for
BS23539.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19538784..19539064 | 17..297 | 100 | -> | Plus |
| arm_3L | 19539233..19539816 | 298..881 | 100 | -> | Plus |
| arm_3L | 19539873..19540199 | 882..1208 | 100 | | Plus |
BS23539.pep Sequence
Translation from 16 to 1209
> BS23539.pep
MENPINFKDIPSEMPQPKRIQLEGETSVAEAINFLKTQCDTRKEHKPEEF
QQDGPTVADELNARLAMVHVRETRAKRIRRLVKFSPNETQALYRFICVCP
RYHPCYVPCQHTGQIIIDRDVLSREEHICFLATPKKDFSSPQLAKQARYY
TKKIYVNQCTARVERLADPHPMRVSDTYNFFKDYLSPRHIAALENQMKPK
PPVEAMSMEKALEYMEEEMRQRKAAKRVQKRRCKGLKKRIILRQRKQMQK
IICVLFEEMKDFLLNDQFIVDENSPLCCVILERLREFTDQEFYTTSNLQE
YQRILANNLTVWVNKFISNLNIYLTPQQIPVKRQMMAENDPEQFVPLSDF
ISVSDEADAEEMMNDVEHGAAEYDDYGYGEDYLPDVLNTDISEETII*
BS23539.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:49:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rcd7-PB | 397 | CG14098-PB | 1..397 | 1..397 | 2088 | 100 | Plus |
| Rcd7-PA | 397 | CG14098-PA | 1..397 | 1..397 | 2088 | 100 | Plus |
