BS23540.complete Sequence
3470 bp assembled on 2011-02-18
GenBank Submission: KX804471
> BS23540.complete
GAAGTTATCAGTCGACATGCAGTTCCACCTGATCAGAAAGTACGCCAGCA
AAGTTAGCCGGGAGCACTACGCCAGCAGTAGCGTGAAGATCTTTCGGCGG
GTCAAGCCTCCGCAAAAGGTAAACAAACCAAAGAAGCCGGAGAATGTGGA
GAATGGCCCAACGGAATATGCGGAAAATCTGGTCAAGGTGCAGATGATCT
CGCGGAATTTGCACGCCCAACTGTTCCCACAAGCGCCGCGAAGCATTTCG
GAGCAGCAGGTGGCCTCCGCTAAGGTTTACAAAGACGAGTTGCGCCGGCA
CGGAGTCGATATCGAAAGTTCTGCTCCTGTTTCGGATGTCCAGTTGAAAT
TGCCCGCGCTTAGGGGCGCCAATATTGAAGAGCACTTCCACAACATTGCC
AAGGAGCAAGTGCAGCCATACGAGGAGTTACTACTTCCCCTGGTCCAATG
CGAGCAGCTGCCGAAGCGTCCGAAGCGATGGGCTTTCCATACCGGCTGGA
CAGCTTATGATCCAGAGGATGGAACAGCCACGCCGGTGGATCACCCACTG
GAGAAGGGACTTGTCTTCGATGTGGAGGTGTGCGTCAGCGAGGGGCAGGC
TCCAGTTTTGGCCACCGCCGTCAGCACCAAGAGATGGTATTCGTGGGTGA
GCTCAAAGCTGACGAAACATCGCCTAAGCGTGGAGAAATTAGAGCCATTA
GATGTGGACACGGACTCAGAGCGACCGCACTACACTACGGACGAACTCAT
ACCACTGGGCACCACTGGACCTGGCCTGGTGGTGGGTCACAATGTCTCCT
ACGACAGGGCGCGACTGAAGGAGCAGTATTTGACCGAGGACACGGGCACT
CGGTTCGTGGACACAATGTCGCTGCACATGTGTGTCAGTGGAGTGACCAG
CTACCAGCGGGCCATGCTCAAATCCAAGAAGGAACCGGCTGCCGAGGATC
TGGGCTGGCTGGAGCAGAGCTCTCTTAACAGTCTGGTGGAGGTGCATCGC
CTCTACTGCGGTGGGGATACGCTATCCAAGGAGCCGAGGAACATTTTCGT
CGAGGGAACTCTGGAGCAAGTACGTCAGAGCTTTCAGTCGTTAACCAACT
ACTGCGCCAGCGATGTGGAGGCTACACATCGGATACTCCGAGTCCTGTAT
CCCTTGTACGCAGAACGATTTCCGCATCCTGCCTCCTTGGCTGGCATGTT
GGAGATGGGATCCGCCTATTTGCCAGTCAATTCCAACTGGGAGCGCTACA
TACGTGAGGCGCAGCTCACCTACGAGGACCTCAGCATCGAGGCCAAGTAC
CATTTGGGCCGCAGAGCTGAGGAAGCGTGCTCCTTGCTGCTCGACGATCA
GTACCGCCAGAATTTGTGGCTCTGGGACGAGGATTGGAGTGTGCAGGAAC
TGAAACTAAAGCAGCCGCCGAAGCGCAAGCCTCTGCCTACTGTGGAGCTT
AAGGATTCTGGAAACACACCGGAGGAGCGACGTCTGCAGGCCAAGTTTCA
GCACCTCTATGATCAACAGGCGCTACTGCCAGCTCGACGGCCATTGCTAC
CCGGTTATCCTCTGTGGTATCGCAAACTGTGCCGCAAACCACCAGCCAAA
AGGGCAGATGAAATTCTAGAGGATGACGAAGAGCCGTGGTCCCCGGGAGC
CAGCGAGATTAGCACCGGCATGCAGATTGCCCCCAAGCTGCTTTCCCTCT
GCTGGGAAGGATATCCCTTGCACTACGAGAGGGAGCAAGGCTGGGGCTTC
CTGGTTCCATTTCGCAGCGATTCAGAAGGAGTAGATCGACTGCCCATGGA
GCAACTTCTGGCGCACTGTCCAGTGCCGGAGTTTGCTCGCCTCAGCGCCT
CGAAGGCGGAAAGTGATATGGCCTTTGACATGCTGCCTGGTCAGGTTGAG
CAGCATTTGGGAAAGCGGGAACACTACAAGAAGTTGTCCCAGAAGCAACA
ACGTCTGGAAACCCAGTACCAAGGCTCTGGCGTGTGGTGCAACAAAGTAC
TGGATGATTGCTGCTTCTTCCTCAAGCTGCCACACAAGAATGGACCTTCC
TTTCGGGTGGGCAACCCCCTATCCAAGGACTTCCTTAACAAGTTCGCAGA
AAACGTGCTGAGCAGTGGTGATCCATCTTGTCAAGCTGCCGCCCGCGTCA
TCGACATTGCCCGCATGATGTCCTACTGGCGCAACAATAGGGATCGAATT
ATGGGTCAGATGGTGGTCTGGCTGGATTCGCAGCAACTACCAAATGAATT
CACTGGCGAAAAGTGCCAGCCAATAGCCTACGGAGCCATTTGTCCACAAG
TTGTTGCCTGTGGCACTTTAACACGTCGCGCGATGGAACCCACATGGATG
ACGGCCTCCAATTCGCGACCTGATCGGCTGGGATCGGAGCTGCGCTCGAT
GGTACAGGCACCACCGGGTTATAGACTCGTTGGTGCCGATGTCGATTCGC
AGGAGCTGTGGATCGCTTCCGTGCTGGGTGATGCCTACGCCTGCGGTGAG
CACGGTGCCACGCCACTCGGTTGGATGACCCTCAGCGGCAGTAAGTCGAA
TGGCAGCGATATGCACTCCATAACGGCAAAGGCGGTCGGCATTTCCCGAG
ATCACGCCAAAGTGATCAACTATGCCCGGATCTACGGAGCTGGTCAATTG
TTTGCCGAGACCCTGCTCCGTCAGTTTAATCCCACATTCAGTGCATCCGA
GGCGAAGGCCAAGGCAATGAAAATGTTCTCCATCACAAAGGGGAAGCGGG
TGTATCGATTGCGAGAAGAGTTCCATGACGAACTGGAGGACAGGGCCTAC
AGCAGCTACGAGGCTTCCCGACTGGCCATTCAACGCAACCGCACCCTGGC
AGAGGTATTTCATCGTCCCAACTGGCAGGGAGGCACGGAGAGCGCCATGT
TCAATCGCCTGGAAGAGATTGCCACGGGATCGCAGCCACGAACGCCGTTC
CTGGGCGGACGTCTTAGTCGAGCATTGGAGGCGGATACTGGACCGGAGCA
GGAGCAACGTTTCCTGCCAACGCGCATCAATTGGGTGGTACAGAGCGGTG
CAGTGGACTTCCTTCATCTGATGCTGGTCAGCATGCGATGGCTGATGGGA
TCGCATGTTAGATTCTGCTTGAGCTTCCATGATGAATTGCGCTATTTAGT
CAAGGAAGAGCTATCGCCCAAAGCGGCGCTGGCCATGCACATCACAAACC
TAATGACGCGCTCCTTTTGTGTGTCCCGCATCGGACTGCAGGATCTGCCC
ATGTCGGTTGCCTTCTTCTCGTCCGTGGAGGTAGACACTGTGCTGCGCAA
GGAGTGCACCATGGACTGCAAGACGCCCTCGAATCCGCATGGCCTGCGCA
TCGGCTATGGTATTCAGCCTGGTCAGAGCTTGAGCGTAGCGGAGGCAATC
GAGAAGGCTGGAGGCAACGATGTCAGTCAGTGGGATTGGATAAAGAAGAG
TTAGAAGCTTTCTAGACCAT
BS23540.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:50:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tam-RA | 3438 | CG8987-PA | 1..3438 | 17..3454 | 17040 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:50:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tam-RA | 3679 | CG8987-RA | 82..3519 | 17..3454 | 17040 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:50:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13825734..13827691 | 1974..17 | 9790 | 100 | Minus |
| 2L | 23513712 | 2L | 13824857..13825681 | 2796..1972 | 4050 | 99.4 | Minus |
| 2L | 23513712 | 2L | 13824140..13824797 | 3454..2797 | 3215 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-27 12:50:51 has no hits.
BS23540.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-18 10:40:22 Download gff for
BS23540.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tam-RA | 103..3540 | 17..3454 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:24:55 Download gff for
BS23540.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tam-RA | 82..3519 | 17..3454 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:05:59 Download gff for
BS23540.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tam-RA | 82..3519 | 17..3454 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:05:59 Download gff for
BS23540.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13824140..13824797 | 2797..3454 | 99 | <- | Minus |
| 2L | 13824857..13825679 | 1974..2796 | 99 | <- | Minus |
| 2L | 13825735..13827691 | 17..1973 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:24:55 Download gff for
BS23540.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13824140..13824797 | 2797..3454 | 99 | <- | Minus |
| arm_2L | 13824857..13825679 | 1974..2796 | 99 | <- | Minus |
| arm_2L | 13825735..13827691 | 17..1973 | 100 | | Minus |
BS23540.pep Sequence
Translation from 16 to 3453
> BS23540.pep
MQFHLIRKYASKVSREHYASSSVKIFRRVKPPQKVNKPKKPENVENGPTE
YAENLVKVQMISRNLHAQLFPQAPRSISEQQVASAKVYKDELRRHGVDIE
SSAPVSDVQLKLPALRGANIEEHFHNIAKEQVQPYEELLLPLVQCEQLPK
RPKRWAFHTGWTAYDPEDGTATPVDHPLEKGLVFDVEVCVSEGQAPVLAT
AVSTKRWYSWVSSKLTKHRLSVEKLEPLDVDTDSERPHYTTDELIPLGTT
GPGLVVGHNVSYDRARLKEQYLTEDTGTRFVDTMSLHMCVSGVTSYQRAM
LKSKKEPAAEDLGWLEQSSLNSLVEVHRLYCGGDTLSKEPRNIFVEGTLE
QVRQSFQSLTNYCASDVEATHRILRVLYPLYAERFPHPASLAGMLEMGSA
YLPVNSNWERYIREAQLTYEDLSIEAKYHLGRRAEEACSLLLDDQYRQNL
WLWDEDWSVQELKLKQPPKRKPLPTVELKDSGNTPEERRLQAKFQHLYDQ
QALLPARRPLLPGYPLWYRKLCRKPPAKRADEILEDDEEPWSPGASEIST
GMQIAPKLLSLCWEGYPLHYEREQGWGFLVPFRSDSEGVDRLPMEQLLAH
CPVPEFARLSASKAESDMAFDMLPGQVEQHLGKREHYKKLSQKQQRLETQ
YQGSGVWCNKVLDDCCFFLKLPHKNGPSFRVGNPLSKDFLNKFAENVLSS
GDPSCQAAARVIDIARMMSYWRNNRDRIMGQMVVWLDSQQLPNEFTGEKC
QPIAYGAICPQVVACGTLTRRAMEPTWMTASNSRPDRLGSELRSMVQAPP
GYRLVGADVDSQELWIASVLGDAYACGEHGATPLGWMTLSGSKSNGSDMH
SITAKAVGISRDHAKVINYARIYGAGQLFAETLLRQFNPTFSASEAKAKA
MKMFSITKGKRVYRLREEFHDELEDRAYSSYEASRLAIQRNRTLAEVFHR
PNWQGGTESAMFNRLEEIATGSQPRTPFLGGRLSRALEADTGPEQEQRFL
PTRINWVVQSGAVDFLHLMLVSMRWLMGSHVRFCLSFHDELRYLVKEELS
PKAALAMHITNLMTRSFCVSRIGLQDLPMSVAFFSSVEVDTVLRKECTMD
CKTPSNPHGLRIGYGIQPGQSLSVAEAIEKAGGNDVSQWDWIKKS*
BS23540.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:29:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tam-PA | 1145 | CG8987-PA | 1..1145 | 1..1145 | 6053 | 100 | Plus |
