BS23541.complete Sequence
1412 bp assembled on 2011-01-25
GenBank Submission: KX802608
> BS23541.complete
GAAGTTATCAGTCGACATGGCGTTCTCCACACAAAAAGAGTTCTTTCACG
TACCCTTCAACAATGAGACATACGAATTTGAGTGTGTCGATGCGTGTGTT
AAACTTAAGAGGTATCCATCCACAGTTGACGACAGATCATGGTCAGCAAA
CGAAGATATGAAGTCACAGTTCGTGGCTGACCTGGTGGCCTGCAACTCAC
CGATAAAGAAGGACCGTGGTGCCGAGCCTACCGCTAGATCTGCTCCATTG
GGTCCTGAGGATGAGTACGGCAGTAATTTAGTGGTGGGCGACAGTTTAAT
AAATGCCGCGGACGACACAATTGGTCGCATGCAGGATCTGATGATCAAGA
ATAATATTCTAAAGAAGAAACTGGCCGATTCTGATGATAAATTGAGGACA
GCCAACCAGGAGACCGCCGAGATCAAGCGGATTATGGACCAGCGCTATGA
CCCCGACAAGAGCAAGGCTCTAAAAAAGAAAATCAAGCAACTGGCCGATG
ACAACAAGATAACTCCGCAGGACGAGAAGGAACTGAACGGTCTGCAGGCG
GCCATTGACGACATGAACAAGGCACACGACATCCTGGAGGCTGAAAATGC
CAATCTAAAGCGGCTGCTCGAAAAACAATCGAAGCGCTGCAAGATGGATA
GCATTAAAGTCGATCCGGAAAAGAGCAACGATATACCCTACCTGCAGAAG
AAGATCGACGACTTGGGTAAGGAGGTGGCGCTACTGCGTGAGTTCGAGGA
CGAAGTCATGAAGCGTTGCGCCAAAAAGTGCGGTGCTGAAGGTGGTGGTG
GTGGTGGAGGTGGCAATGCTGGTCGTGCCGCTAGGGGTCCTCCTGGAAAG
GGCAGTTTCTCGCCGGACAAGGATGCCGAGAACATCAAAAAGATTCTAGC
CGATCGTGATGCCCTGCGAAAGAAGTGTAAGGAACTGGAGGAGCTCGGCG
ACAAAGTCAATCAACTGGAGGAGAAGGCCAATGAGGCGGAGTGTCTGACA
TGCAACCTGGAGGAAAATCTACGGAAACAGTGCCGATGCATGGAGCAAAT
GCAGTGTGAAATGCGAGATATGCAGAACTACTACGAAAACGAGGTAGACA
AGGCTAGGGGCAATGAGGAAATCCTTAAGTGCCGTTGTAATCAGATGAAG
CAGGAACTGGTGGCAGCCAAATGTGCCGTCCAGCGGGCCCAGTGTCAACA
AATGGAGATCGATGTGCTGCGAAACGAGCTGCGAAAACGGGACACTGCCC
TCAACGCATACGACTGCCAGTTCCAGCAGATTATGATGAAGGCCAAGATG
TTCAAGGCCGCCGGTTACCGCTTCCTTGACGACTTGCCTCCCGACTGCAG
CGAAAGTTGCGTGGATGGCCCTGGTGAAGAGGAAGAGGGAAATTGAAAGC
TTTCTAGACCAT
BS23541.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:34:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31161-RB | 1380 | CG31161-PB | 1..1380 | 17..1396 | 6870 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:34:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31161-RB | 1666 | CG31161-RB | 180..1561 | 16..1397 | 6880 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:34:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22616690..22617803 | 16..1129 | 5555 | 99.9 | Plus |
| 3R | 32079331 | 3R | 22617872..22618029 | 1128..1285 | 775 | 99.4 | Plus |
| 3R | 32079331 | 3R | 22618083..22618195 | 1285..1397 | 565 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:34:40 has no hits.
BS23541.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:16:14 Download gff for
BS23541.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31161-RB | 181..1559 | 17..1395 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:00:22 Download gff for
BS23541.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31161-RB | 181..1559 | 17..1395 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:07:43 Download gff for
BS23541.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31161-RB | 181..1559 | 17..1395 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:07:43 Download gff for
BS23541.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22618084..22618193 | 1286..1395 | 100 | | Plus |
| 3R | 22617874..22618029 | 1130..1285 | 99 | -> | Plus |
| 3R | 22616691..22617803 | 17..1129 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:00:22 Download gff for
BS23541.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18442413..18443525 | 17..1129 | 99 | -> | Plus |
| arm_3R | 18443596..18443751 | 1130..1285 | 99 | -> | Plus |
| arm_3R | 18443806..18443915 | 1286..1395 | 100 | | Plus |
BS23541.pep Sequence
Translation from 16 to 1395
> BS23541.pep
MAFSTQKEFFHVPFNNETYEFECVDACVKLKRYPSTVDDRSWSANEDMKS
QFVADLVACNSPIKKDRGAEPTARSAPLGPEDEYGSNLVVGDSLINAADD
TIGRMQDLMIKNNILKKKLADSDDKLRTANQETAEIKRIMDQRYDPDKSK
ALKKKIKQLADDNKITPQDEKELNGLQAAIDDMNKAHDILEAENANLKRL
LEKQSKRCKMDSIKVDPEKSNDIPYLQKKIDDLGKEVALLREFEDEVMKR
CAKKCGAEGGGGGGGGNAGRAARGPPGKGSFSPDKDAENIKKILADRDAL
RKKCKELEELGDKVNQLEEKANEAECLTCNLEENLRKQCRCMEQMQCEMR
DMQNYYENEVDKARGNEEILKCRCNQMKQELVAAKCAVQRAQCQQMEIDV
LRNELRKRDTALNAYDCQFQQIMMKAKMFKAAGYRFLDDLPPDCSESCVD
GPGEEEEGN*
BS23541.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:49:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31161-PB | 459 | CG31161-PB | 1..459 | 1..459 | 2410 | 100 | Plus |
| Ccy-PA | 1333 | CG45930-PA | 1..410 | 1..424 | 1115 | 52.2 | Plus |
