BS23542.complete Sequence
1763 bp assembled on 2011-02-18
GenBank Submission: KX803023
> BS23542.complete
GAAGTTATCAGTCGACATGCCGCGACACAAAACACTAGTGAGCATTGGTC
ATCGTATTATGAAGCGCTTCAAACAGTTGGATCTCAGGGTCGACAAGGAG
TTCGTCATCTACATGGTTCATCTGCTGGCAAGAGATCGGCGCAAAGGTCT
CCTGAAGTACGACCTCAATAAGCCAACCGCCTGTGCCATTGAGGGTTTCG
TGAATACAATTGTGGATAGCTATGTCAATTCGAAAGATTGCACTATGGCC
AACATGAAGATGGCTTGGGTAATGAAAAAGGGAGTAACCATAGACCTTGA
ATACGTCAAGAAGAAGTACGAGGAAAAGTTCCAAACCGAACTGCAGCTGC
TAATCAAGGATATCCTTCAGTATCCCGAGACTTGCAGTAAAGTGCAGTTG
GACCAGCTCTTCGCAAAGATGCAGGTCTTCATAGTGGCCTGCTACAGTCT
GGGCTCGCCCAAGAATCATGTTCTGCTTAAGCTGACTGCCCAGGCTCTCA
ACAGCGTCATCGGTCGAAGTGACCTACAGAATTATGTCCTGAAGAAGAAG
TACCATCGGCTAGAGTATCTTCAACGCTTGTCGGCGACCGTGGGCGGCAT
TGTGATCTATAACAACGATGGCCCCGATGGAGATCGGGAGAATGTTAGAA
GCGTGGTCGATGATCTGGAAATGGCCCAGAAAAACACGGAAGCCGCATTT
GCAGCCAGTATGGGAAGGGCGGTCAAGATGCAGTCCACTTGCCAGGCGGC
ACTGGATGACCTCATAAACATAGATCATAAGGACGAGACCTTGACCTACC
GCGTGCCCCTCGAGCACCTGGATCGGCTGAACCAGTTTGCGGCGACCTAC
TTTATGCTCCATCGCTGTCTGACGACTCTGAACGAACATTACCAGAAGAC
AGTGTACCTAATTGAAGTGGAGCATAAGCGATATCAATGCGTGATCTGCA
AGATTGATGATACCCTATCCATGCGCACGGCTATTGATTCGGAGCTTATA
TTTCCGCACTTTGTGTACCTCTCTCAGGTGTGGGGCAATCTGAACAACTA
CCTGAACCACATTGTTGAGTTAAACAAGCTGAGGGAGCAGGTGGAGGCAT
TGGTCGTCGACGACTTGATGACCCTGACAAAGGCTACGATTGCCGAGCTG
CAGGCGCTTCATAAGCGGATAAAGAAGCCCAAGGTCTGCAGCTTTGAGGA
ACGCATGGATGCCGTGAAGGAGTTGCAGACCGATGGCAACTTTTGCAAGC
TCAACAAGGCAGATATAAAGGAGTTTTGCTCTCTAGCCATGACCATCACC
AACGGCCTGCTTATGCCGGCCCAGGTGACCAGAAAGCTGTGCTCCAATGT
GGACATTACATTTGGTTTCCGGGACCCAAGATACGCTCGATTCGCGGAGC
TGCGATTTGAGCCTTTCATAGCCGCCTTTAGAAAAGTGGTTTTCAACAAT
GCGAACCTGGCTCTGCTGTTCAAATTGGACGATGCGCTAATAGAGCAGGA
ACTGCAGAATCTGGTAGTTGAGCCACCAAAGCAGACAGATTTTGAGTGTC
AAACCGAAATGGTCGTCACCAACGACCTAACGCCAGCCAACTGGATAAAC
GTAACGTGGAATGCGTGGGATTATCATCGGGAGACAATCCACTTGGCCAA
TATACGTAAGAAGCAGACCAACGACGCGCAGACCAACATCAGTTACGGAA
GGCGCAACGCACAGAATCAAACCTACAACTGTCGGCAACATAAGTAGAAG
CTTTCTAGACCAT
BS23542.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:51:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13436-RA | 1731 | CG13436-PA | 1..1731 | 17..1747 | 8475 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:51:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13436-RA | 1917 | CG13436-RA | 81..1812 | 17..1748 | 8480 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:51:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20637574..20638318 | 1004..1748 | 3665 | 99.5 | Plus |
| 2R | 25286936 | 2R | 20636472..20637108 | 17..653 | 3140 | 99.5 | Plus |
| 2R | 25286936 | 2R | 20637164..20637514 | 653..1003 | 1680 | 98.6 | Plus |
Blast to na_te.dros performed on 2014-11-27 12:51:55 has no hits.
BS23542.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-18 10:40:22 Download gff for
BS23542.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13436-RA | 81..1811 | 17..1747 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:25:07 Download gff for
BS23542.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13436-RA | 81..1811 | 17..1747 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:06:19 Download gff for
BS23542.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13436-RA | 81..1811 | 17..1747 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:06:19 Download gff for
BS23542.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20636472..20637108 | 17..653 | 99 | -> | Plus |
| 2R | 20637165..20637514 | 654..1003 | 98 | -> | Plus |
| 2R | 20637574..20638317 | 1004..1747 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:25:07 Download gff for
BS23542.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16524670..16525019 | 654..1003 | 98 | -> | Plus |
| arm_2R | 16523977..16524613 | 17..653 | 99 | -> | Plus |
| arm_2R | 16525079..16525822 | 1004..1747 | 99 | | Plus |
BS23542.pep Sequence
Translation from 16 to 1746
> BS23542.pep
MPRHKTLVSIGHRIMKRFKQLDLRVDKEFVIYMVHLLARDRRKGLLKYDL
NKPTACAIEGFVNTIVDSYVNSKDCTMANMKMAWVMKKGVTIDLEYVKKK
YEEKFQTELQLLIKDILQYPETCSKVQLDQLFAKMQVFIVACYSLGSPKN
HVLLKLTAQALNSVIGRSDLQNYVLKKKYHRLEYLQRLSATVGGIVIYNN
DGPDGDRENVRSVVDDLEMAQKNTEAAFAASMGRAVKMQSTCQAALDDLI
NIDHKDETLTYRVPLEHLDRLNQFAATYFMLHRCLTTLNEHYQKTVYLIE
VEHKRYQCVICKIDDTLSMRTAIDSELIFPHFVYLSQVWGNLNNYLNHIV
ELNKLREQVEALVVDDLMTLTKATIAELQALHKRIKKPKVCSFEERMDAV
KELQTDGNFCKLNKADIKEFCSLAMTITNGLLMPAQVTRKLCSNVDITFG
FRDPRYARFAELRFEPFIAAFRKVVFNNANLALLFKLDDALIEQELQNLV
VEPPKQTDFECQTEMVVTNDLTPANWINVTWNAWDYHRETIHLANIRKKQ
TNDAQTNISYGRRNAQNQTYNCRQHK*
BS23542.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:30:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13436-PA | 576 | CG13436-PA | 1..576 | 1..576 | 3000 | 100 | Plus |
