Clone BS23543 Report

Search the DGRC for BS23543

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:235
Well:43
Vector:pDNR-Dual
Associated Gene/TranscriptCG8292-RA
Protein status:BS23543.pep: full length peptide match
Sequenced Size:896

Clone Sequence Records

BS23543.complete Sequence

896 bp assembled on 2011-02-07

GenBank Submission: KX803351

> BS23543.complete
GAAGTTATCAGTCGACATGGATGAGTTCGGCGTCTTCGATTACAAGCGCC
CTGCCAGCGCTACAGATCCCGATTGGAGGACCTCGTACTATCGAGGGCAT
CGCCACATTACAGACTTGAGAATGGGTAACAAGCTGAACGCCAAGTTTAC
GGATAAGGGTATTTATGTAAAAGATCCGCTGCTGTCCGAGAAGCCGACTT
CTGAGTGCATGGCCAACTATGTGTGGCAGTATAACGATCCCAACGCACTT
AGAAATCCCTCGCTCAACATGAAAACACAGTATATGAAACCATTTGAGGA
GGGTTCCCTTCGCTTTGTAAAGCGAAAGATGAAGCCCATTTCTAGTGTCA
GTCATGAGTCGTATGTACTTAAGGAGCTGCCGGAGGAACAGGAAATATTG
CCTGTAACAATGCCCACTCCGGTGGTAGCCACCAAGCTAGTCATCGACCG
TTCGGAGGCGTCCTTTAGCAAGTACCTTGATCCCTCCTCCACCACATACA
ATCTGTCGTATGTGCGCTGGGGTCCCGAGGACTTGTGTGGCGGAGTAGCT
GCCCACGACAATATTACATACTGGAATTGGACGGAGAAGATGCCGCCCAT
CCAGAAAGTATCCCGCGAAGAGGATCCTACAATGTGTGACGAGGGTAATA
CGCATAATTGCCCAAAGCGACGCTGTGAGTTTCAAAACCTCACCAAACGA
GTGCCGCATTCGGGAATGGTCACCGAGGTGCGCGCTAATTTCACGGATCC
ACAATTTCGAAGGGTTGAATTCGATCCAGAAGTTAAGCCCATACTCGTGC
ACGAGGAAGTCACTCCGTTTGCGGAGAAAAGCGAATACGGCATCTACGGA
TCGGGAGAACCAGTTATCAAATACGTTTAGAAGCTTTCTAGACCAT

BS23543.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:11:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG8292-RA 864 CG8292-PA 1..864 17..880 4305 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:11:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG8292-RA 1105 CG8292-RA 118..982 16..880 4310 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:11:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8216974..8217627 880..227 3255 99.8 Minus
2L 23513712 2L 8217687..8217900 229..16 1070 100 Minus
Blast to na_te.dros performed on 2014-11-26 22:11:48 has no hits.

BS23543.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-07 10:59:39 Download gff for BS23543.complete
Subject Subject Range Query Range Percent Splice Strand
CG8292-RA 119..982 17..880 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:49:59 Download gff for BS23543.complete
Subject Subject Range Query Range Percent Splice Strand
CG8292-RA 119..982 17..880 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:53:58 Download gff for BS23543.complete
Subject Subject Range Query Range Percent Splice Strand
CG8292-RA 119..982 17..880 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:53:58 Download gff for BS23543.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8217687..8217899 17..229 100   Minus
2L 8216974..8217624 230..880 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:49:59 Download gff for BS23543.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8216974..8217624 230..880 99 <- Minus
arm_2L 8217687..8217899 17..229 100   Minus

BS23543.pep Sequence

Translation from 16 to 879

> BS23543.pep
MDEFGVFDYKRPASATDPDWRTSYYRGHRHITDLRMGNKLNAKFTDKGIY
VKDPLLSEKPTSECMANYVWQYNDPNALRNPSLNMKTQYMKPFEEGSLRF
VKRKMKPISSVSHESYVLKELPEEQEILPVTMPTPVVATKLVIDRSEASF
SKYLDPSSTTYNLSYVRWGPEDLCGGVAAHDNITYWNWTEKMPPIQKVSR
EEDPTMCDEGNTHNCPKRRCEFQNLTKRVPHSGMVTEVRANFTDPQFRRV
EFDPEVKPILVHEEVTPFAEKSEYGIYGSGEPVIKYV*

BS23543.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:01:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG8292-PA 287 CG8292-PA 1..287 1..287 1559 100 Plus