BS23543.complete Sequence
896 bp assembled on 2011-02-07
GenBank Submission: KX803351
> BS23543.complete
GAAGTTATCAGTCGACATGGATGAGTTCGGCGTCTTCGATTACAAGCGCC
CTGCCAGCGCTACAGATCCCGATTGGAGGACCTCGTACTATCGAGGGCAT
CGCCACATTACAGACTTGAGAATGGGTAACAAGCTGAACGCCAAGTTTAC
GGATAAGGGTATTTATGTAAAAGATCCGCTGCTGTCCGAGAAGCCGACTT
CTGAGTGCATGGCCAACTATGTGTGGCAGTATAACGATCCCAACGCACTT
AGAAATCCCTCGCTCAACATGAAAACACAGTATATGAAACCATTTGAGGA
GGGTTCCCTTCGCTTTGTAAAGCGAAAGATGAAGCCCATTTCTAGTGTCA
GTCATGAGTCGTATGTACTTAAGGAGCTGCCGGAGGAACAGGAAATATTG
CCTGTAACAATGCCCACTCCGGTGGTAGCCACCAAGCTAGTCATCGACCG
TTCGGAGGCGTCCTTTAGCAAGTACCTTGATCCCTCCTCCACCACATACA
ATCTGTCGTATGTGCGCTGGGGTCCCGAGGACTTGTGTGGCGGAGTAGCT
GCCCACGACAATATTACATACTGGAATTGGACGGAGAAGATGCCGCCCAT
CCAGAAAGTATCCCGCGAAGAGGATCCTACAATGTGTGACGAGGGTAATA
CGCATAATTGCCCAAAGCGACGCTGTGAGTTTCAAAACCTCACCAAACGA
GTGCCGCATTCGGGAATGGTCACCGAGGTGCGCGCTAATTTCACGGATCC
ACAATTTCGAAGGGTTGAATTCGATCCAGAAGTTAAGCCCATACTCGTGC
ACGAGGAAGTCACTCCGTTTGCGGAGAAAAGCGAATACGGCATCTACGGA
TCGGGAGAACCAGTTATCAAATACGTTTAGAAGCTTTCTAGACCAT
BS23543.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:11:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8292-RA | 864 | CG8292-PA | 1..864 | 17..880 | 4305 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:11:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8292-RA | 1105 | CG8292-RA | 118..982 | 16..880 | 4310 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:11:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8216974..8217627 | 880..227 | 3255 | 99.8 | Minus |
2L | 23513712 | 2L | 8217687..8217900 | 229..16 | 1070 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:11:48 has no hits.
BS23543.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-07 10:59:39 Download gff for
BS23543.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8292-RA | 119..982 | 17..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:49:59 Download gff for
BS23543.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8292-RA | 119..982 | 17..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:53:58 Download gff for
BS23543.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8292-RA | 119..982 | 17..880 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:53:58 Download gff for
BS23543.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8217687..8217899 | 17..229 | 100 | | Minus |
2L | 8216974..8217624 | 230..880 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:49:59 Download gff for
BS23543.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8216974..8217624 | 230..880 | 99 | <- | Minus |
arm_2L | 8217687..8217899 | 17..229 | 100 | | Minus |
BS23543.pep Sequence
Translation from 16 to 879
> BS23543.pep
MDEFGVFDYKRPASATDPDWRTSYYRGHRHITDLRMGNKLNAKFTDKGIY
VKDPLLSEKPTSECMANYVWQYNDPNALRNPSLNMKTQYMKPFEEGSLRF
VKRKMKPISSVSHESYVLKELPEEQEILPVTMPTPVVATKLVIDRSEASF
SKYLDPSSTTYNLSYVRWGPEDLCGGVAAHDNITYWNWTEKMPPIQKVSR
EEDPTMCDEGNTHNCPKRRCEFQNLTKRVPHSGMVTEVRANFTDPQFRRV
EFDPEVKPILVHEEVTPFAEKSEYGIYGSGEPVIKYV*
BS23543.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:01:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8292-PA | 287 | CG8292-PA | 1..287 | 1..287 | 1559 | 100 | Plus |