BS23544.complete Sequence
4733 bp assembled on 2011-02-18
GenBank Submission: KX802739
> BS23544.complete
GAAGTTATCAGTCGACATGAGTATAAACAAATCCATTCGTGGCAGCCGAA
GGACTCGAAGATCCCTAGCTTCGGGTGGTGGTGATCTCATTGGCCCCTAT
ATCTATTGCATCAACTTCTATGATAATGGATTGAGTGCGGTGCGGGATGA
GTTTGTGAAGCGGCTTGAAAGTGGGCTACGACGTGCCATGTTCGTCATCG
ACTTGGATAAGGAAGTTGCGGAGGCCAATTATCAGTTCCAACGAAAGTCG
AGGACCAAGAAAGCTGGATCTCTGGACATGAAGTCCTTAGATCCATTGAA
CATTGTCCTGCAATGCATTCAGAACTGTGTGGAAGAGTTTGACAGAATAA
CGAAGCAGATTGAGTCAGAGGCGAATTTCGACCTGTACTCCTACTGGCAA
CGAAATATCCCTGCACAGCTCAAGAACCTATTGGCGCCTAAAAAAAAGGG
TGCTCCAGATACGAAGCGTGACCTAAATACAGCTAGATCCAAAACGGGCA
AGACATCGAGCGACAAGATGCGCCTGGAGAAGATCAAGTGCTCGTCCGTT
ACAGCCAAGGAGCACCACAAAGTTGGCAAGGGAGCGCCGGTGTCCAAGCG
AGAATACATTCGAGACAATCCGACGTTCACGAAAATGCTGATCCTGATCG
TGGGGCAAATGGATAACGACTTCTACAAATTGCTATTGGCCTACGAACAA
CCGCTGCGAGCTATTATTAACTTTATGCCGGAGGAGAGTGCCTACGATAT
TTTAGTGCCCCGACCGCGACGGGAACAGCAGCTCCAGGAAGCGTTGGCTG
CCATCCAGAAGGACATCCATTCGCTGCGAAAGAGGACTCCCACAAAACCG
GTTGGCATCTTTCAGCAGCGGCTTCCCCAGATGTCCGCTTGTATGGCAGC
CAAATTCACGGACGATATCTTTGACCAGCTAAGTTGGTACATGTACGACG
TGGAAACCCTGAGGGAGTGGTATCGATCCTACTACGTGGATCCGTACAAG
GAGACAAATATTAAAATGGATCCCTCGATGTCGTTGGTGGAAGCATTCCA
CATTGTTGAATCGCTGAGCATTCAGGGGCACTATCTCAAGACGCAAATGC
CGGCTTCCCGTAATGATAATGGTACCGTTTACCTATATCTGGAGTCGCTA
ATGAGCACGTTTGGTAATCCAAAGGAACTGATGACCGAAACGGAGGTCCT
GCTTCTGGCAAATCCCACGCCATCGGTTCAAACTCGAGTTTTGGACAAAG
TTAAGGTATACGCCAATTCGTTTAAGAGCATCGTAAAGATGCACAAAAAC
GACCGAATTTTTGTGGAGGAGGCCAATGGACTGCTGTCCAATCTGATTTC
ATATATGGATCAGAGTCTCATGCGAAATGTCTACCACGGCTGTCTGGAGT
ATAATCTTTTGCGACGATACTTTACATCCGGGTATATCAACAGCTCACTG
AAGTGTCAGCCCTACAATGGTGATGTGGAACCGATCTATCTGCCCAAGTT
TGCCGAACTCTATCTCACGGATGACTCGGTTATGCAACGAATTATCGAGC
TGGTCAAGGACTACGATGACTTCAGCCTGGAGGAGGTGCAGCCCAATGTC
CATCTCTATACTTTTCGAAGGTCACTAAACGAGGTATTCGAACAGGAAAA
TCAAACAGTCATCCCAACACGGCTCTGCTTCAGGGATTTTACACTGTACG
AAATGGAGAATTTTCTAAAGGACTTGGTCACCCCACAAAGGTTCAACGAG
GTGACCGAAAGTTATTTGTCACGACAAACGGAGAGCGCTGATAATATTGC
GACCCAAGATCCATTCATAGTGAGGTGCAACGAGGAGAACGATAGTGTAC
CCATCGATCCAAAAGTGTTTGTCCGGCGAAAATCGATTAAGGAGCAGCTA
GCCAAGAAGAAGGAAAAAGAGAGGAAGGAGCAAGAGGAATCGAGGACTGC
CAGCCGAAAGGTGTCTGTAGCTCAAGATGGTCTATTGTCCAGTAGAACCT
TTAGGCAGTCCCAGGCGCGTGCTACGATAGCTTCCATTCTGCAGGCAAAA
GATTCAACCGCCGACTCCAAGCACGCATTCTTTGTGGGTCTTGGACGCAA
CCATCCCTTGCTGGAGGGGTATAATCTGGATGACACACGGCAAACCATTA
AGTGCAAGACCTCGAAGTACTTCTTCGAAGAGGGAAGAATTGTGTTGTAT
GAGGAGAGGTGGAACTTTCGCCAGATGAACAAGTGTCTTGCCCTCGAGAT
TGGTGGCCAGGAGGTACATTTTCGGAGTGCCGACAACCCGCTGGGAGTCA
CTGCCGCCGATTCCAGTGTTAGGATCGAGTCGAAGAACGGCATAAGTCTA
CGGGTCTTGGCCACGCAGACCGAATGCGCCAAGGCGGTACTGAACTTTCC
CAATGGCCTGAGTACCTACTGCCACGACACCCACACGGAACACGTGTGGC
AATATCAGGAGAACGTGCTGGACGAGAGTCGGCGTGTGTGCACACCTTAT
GGTTGTGTGATCTCATTCTATCAGAGCACCGACACCATTGTGATTATGCG
GTATAATGGTGAGGTGTACCAACTGTTCACCTTCACGGAGGCCGACAACG
AGGAGGAGGAGGACCTCAACTCGGAGTTTATAAATGCCTGCTCCACGCAG
TCCACCTACTCCAGTTACCAGCCCATTCGCGATTCGAAGAAAAAGCAGAG
GAGCTGTGAGAATTCGTTGAAGAAAACCTCCACTACTCGCAGTGTGGGCG
GATTGGACTCCATCATACGTCCGTCCATGTTCAGTGTTGACTCCAAGAAG
AGTCAGAGTTCCAAAAAATCAATTGGGGGTAAGAGAAAAAGCCAGCTGCT
TAAGGAACAACAGGCTGCAGCATTGTTCGAAAGCATCAAGTTCGAGTTAA
ACTATCTCAATTTCATTATGGCACTCTACAAGCTAAGCTATCGACACCTC
AAGCTGACCACGTCGCTGGGCAGCGTGGTTCATGTGCAACGCGATGGAAA
GATCTGGTGCGGGAAACCCTACCGGAACACCGAGTGGCACGACTATTATG
CCAACGAGTCATATTCGATGCGAGACGATGGTGTCAAGATGGTCTGGACG
TTGGGAGAGCTGCGGTGCTATCACAACGATGGCACTGTCATTACTTCCGA
AACCGCCGAAGGCTGGGATCCCGGCACGGATGTCGACGAAATTGACATGG
AAATCAGTTCGAGCAGCTCACATGCGAATGTAGAAATCCAACCAAGCCAC
ATATTCCGAAAGGAGACCATTTTTATCAACGATCCGGAAGGTTTGCCATT
TAAAGATGTCAGCATAAGTAGTTCACAGGGTGTAGTTTCTCAAAGAATGA
GTTTGAGAAGTAAAGAAATCTCTTCCAGTAGTGATGTCATGCCAGAGGAG
GAGGAGGGAGAGGTGGATCTGGAAAAAAGCTACATAACCTTCCTTCCAAA
CAGTTACTTCATTGCCCACAAAGTCTATGCCGGTATCCGCTTCACATTCA
GCCACATCACAAATGTGGATCTACATCTGGACACCTCGATCTTTACCTGC
GACAATCTGAAGGTTCGTGTCTTTAGAGCTCCTTTGACAGCAGGTGTGCA
GTATTCTGAGCCCGTTGAAAACCCGTCATCTGCGGCCGATCCGGATGAAT
GGACAAAGCCCGAAGTTCGCCCATCAACTAAAAGTCAGCGATCAGATCGA
TCTTTTGAAGAAACTACCTCCAGCGAGGAGCAGTCGGCGGAAGACATGGA
TCTCGATGTTGCATGTGTGGAGGTCGAGTGCAGCAATTTGGCATTAACTT
TGTTTGGTGATCGGGTCATCATACAGACCCACCTGCGAAAGTTTGGATGT
GACGAGAACGCAAAGTGCGATTTGCAAGTGCGTGACGATATCGAGTTGAA
AGTGAACTTTGGTGAAAGTCTGTTGACCACTTTTCGAAATTGGGTGGACG
AACTAACCAGTTTTATCAATTGTTTCTGTCCCAAGAGGCGCACATTGTAC
TTTCTGGAAACCCAAAACAGATCTTGCCAAAGAAAAGGATTTGAGTTGCA
TAAATCGGTGCCGCCTCTCGGAAAATACAACTTATGTGCTGGCAACTATT
TTATCGATGTAAACGAGCTGACATCTGTAAATAGCAAAATGCAAAACCGA
CACGATTGGTACGAGCAGGATATGCAAAAGTTTCCGCGCTTTCAAACTCG
CAAGAAACCAGTGAAACCCGATTTTCCAATGGTTCTGAATTCCAGAATTT
ACGTGGAGATTCCTGCACAACTGGCCAACACGGATCGGATACACCAGTTC
GTTTCTGAATTTGATTCGATCAAGTACAGAAAGCAGCGGTATCGTTTTAA
TGAAGCTATTATGTTTCATCTCTATCCGCGACTGCAGCTTTTGGTTCAGC
AGGAGATAAGCAAGCGCAGTTGGAAGAATCATCATGAAGAAAATCGCCGG
CGCATGTTTATAGAACAACAGCGCTTTAGCCTCTATATGGCCATGCTGAA
GCACAAGGTGTATCCCAGCTACTTTCAGTTCAAGGACCAGTTCAACTCGC
ATGTGCGTAACATCGAGTTCTTCCAGTTCATGACATCCAAGTGCAACGAG
AAGACGCATCCCGATGATATTATCACCGATCCCGCCGAGGAGCCCAGTCC
GTCAATCAAGCCCAAATTCAAGAAGAACAAATGTGTTTGTCCCAAGTACC
TCAAGTCTTTAGATTAGAAGCTTTCTAGACCAT
BS23544.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:36:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ms(2)34Fe-RA | 4701 | CG15287-PA | 1..4701 | 17..4717 | 23490 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:36:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ms(2)34Fe-RA | 4826 | CG15287-RA | 41..4741 | 17..4717 | 23490 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:36:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 14329171..14330275 | 605..1709 | 5510 | 99.9 | Plus |
| 2L | 23513712 | 2L | 14331146..14331953 | 2456..3263 | 4040 | 100 | Plus |
| 2L | 23513712 | 2L | 14330338..14331087 | 1710..2459 | 3750 | 100 | Plus |
| 2L | 23513712 | 2L | 14332066..14332687 | 3261..3882 | 3110 | 100 | Plus |
| 2L | 23513712 | 2L | 14333412..14333775 | 4354..4717 | 1820 | 100 | Plus |
| 2L | 23513712 | 2L | 14328774..14329112 | 266..604 | 1695 | 100 | Plus |
| 2L | 23513712 | 2L | 14328469..14328719 | 17..267 | 1255 | 100 | Plus |
| 2L | 23513712 | 2L | 14332976..14333185 | 4036..4245 | 1050 | 100 | Plus |
| 2L | 23513712 | 2L | 14332762..14332918 | 3882..4038 | 785 | 100 | Plus |
| 2L | 23513712 | 2L | 14333242..14333351 | 4244..4353 | 550 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:36:31 has no hits.
BS23544.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-09 09:37:57 Download gff for
BS23544.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ms(2)34Fe-RA | 41..4741 | 17..4717 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:02:45 Download gff for
BS23544.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ms(2)34Fe-RA | 41..4741 | 17..4717 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:45:19 Download gff for
BS23544.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ms(2)34Fe-RA | 41..4741 | 17..4717 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:45:19 Download gff for
BS23544.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 14328775..14329112 | 267..604 | 100 | -> | Plus |
| 2L | 14332978..14333185 | 4038..4245 | 100 | -> | Plus |
| 2L | 14333244..14333351 | 4246..4353 | 100 | -> | Plus |
| 2L | 14328469..14328718 | 17..266 | 100 | -> | Plus |
| 2L | 14329171..14330275 | 605..1709 | 99 | -> | Plus |
| 2L | 14330338..14331086 | 1710..2458 | 100 | -> | Plus |
| 2L | 14331149..14331952 | 2459..3262 | 100 | -> | Plus |
| 2L | 14332068..14332687 | 3263..3882 | 100 | -> | Plus |
| 2L | 14332763..14332917 | 3883..4037 | 100 | -> | Plus |
| 2L | 14333412..14333775 | 4354..4717 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:02:45 Download gff for
BS23544.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 14328775..14329112 | 267..604 | 100 | -> | Plus |
| arm_2L | 14332978..14333185 | 4038..4245 | 100 | -> | Plus |
| arm_2L | 14333244..14333351 | 4246..4353 | 100 | -> | Plus |
| arm_2L | 14328469..14328718 | 17..266 | 100 | -> | Plus |
| arm_2L | 14329171..14330275 | 605..1709 | 99 | -> | Plus |
| arm_2L | 14330338..14331086 | 1710..2458 | 100 | -> | Plus |
| arm_2L | 14331149..14331952 | 2459..3262 | 100 | -> | Plus |
| arm_2L | 14332068..14332687 | 3263..3882 | 100 | -> | Plus |
| arm_2L | 14332763..14332917 | 3883..4037 | 100 | -> | Plus |
| arm_2L | 14333412..14333775 | 4354..4717 | 100 | | Plus |
BS23544.pep Sequence
Translation from 16 to 4716
> BS23544.pep
MSINKSIRGSRRTRRSLASGGGDLIGPYIYCINFYDNGLSAVRDEFVKRL
ESGLRRAMFVIDLDKEVAEANYQFQRKSRTKKAGSLDMKSLDPLNIVLQC
IQNCVEEFDRITKQIESEANFDLYSYWQRNIPAQLKNLLAPKKKGAPDTK
RDLNTARSKTGKTSSDKMRLEKIKCSSVTAKEHHKVGKGAPVSKREYIRD
NPTFTKMLILIVGQMDNDFYKLLLAYEQPLRAIINFMPEESAYDILVPRP
RREQQLQEALAAIQKDIHSLRKRTPTKPVGIFQQRLPQMSACMAAKFTDD
IFDQLSWYMYDVETLREWYRSYYVDPYKETNIKMDPSMSLVEAFHIVESL
SIQGHYLKTQMPASRNDNGTVYLYLESLMSTFGNPKELMTETEVLLLANP
TPSVQTRVLDKVKVYANSFKSIVKMHKNDRIFVEEANGLLSNLISYMDQS
LMRNVYHGCLEYNLLRRYFTSGYINSSLKCQPYNGDVEPIYLPKFAELYL
TDDSVMQRIIELVKDYDDFSLEEVQPNVHLYTFRRSLNEVFEQENQTVIP
TRLCFRDFTLYEMENFLKDLVTPQRFNEVTESYLSRQTESADNIATQDPF
IVRCNEENDSVPIDPKVFVRRKSIKEQLAKKKEKERKEQEESRTASRKVS
VAQDGLLSSRTFRQSQARATIASILQAKDSTADSKHAFFVGLGRNHPLLE
GYNLDDTRQTIKCKTSKYFFEEGRIVLYEERWNFRQMNKCLALEIGGQEV
HFRSADNPLGVTAADSSVRIESKNGISLRVLATQTECAKAVLNFPNGLST
YCHDTHTEHVWQYQENVLDESRRVCTPYGCVISFYQSTDTIVIMRYNGEV
YQLFTFTEADNEEEEDLNSEFINACSTQSTYSSYQPIRDSKKKQRSCENS
LKKTSTTRSVGGLDSIIRPSMFSVDSKKSQSSKKSIGGKRKSQLLKEQQA
AALFESIKFELNYLNFIMALYKLSYRHLKLTTSLGSVVHVQRDGKIWCGK
PYRNTEWHDYYANESYSMRDDGVKMVWTLGELRCYHNDGTVITSETAEGW
DPGTDVDEIDMEISSSSSHANVEIQPSHIFRKETIFINDPEGLPFKDVSI
SSSQGVVSQRMSLRSKEISSSSDVMPEEEEGEVDLEKSYITFLPNSYFIA
HKVYAGIRFTFSHITNVDLHLDTSIFTCDNLKVRVFRAPLTAGVQYSEPV
ENPSSAADPDEWTKPEVRPSTKSQRSDRSFEETTSSEEQSAEDMDLDVAC
VEVECSNLALTLFGDRVIIQTHLRKFGCDENAKCDLQVRDDIELKVNFGE
SLLTTFRNWVDELTSFINCFCPKRRTLYFLETQNRSCQRKGFELHKSVPP
LGKYNLCAGNYFIDVNELTSVNSKMQNRHDWYEQDMQKFPRFQTRKKPVK
PDFPMVLNSRIYVEIPAQLANTDRIHQFVSEFDSIKYRKQRYRFNEAIMF
HLYPRLQLLVQQEISKRSWKNHHEENRRRMFIEQQRFSLYMAMLKHKVYP
SYFQFKDQFNSHVRNIEFFQFMTSKCNEKTHPDDIITDPAEEPSPSIKPK
FKKNKCVCPKYLKSLD*
BS23544.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:30:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ms(2)34Fe-PA | 1566 | CG15287-PA | 1..1566 | 1..1566 | 8181 | 100 | Plus |
