BS23545.complete Sequence
1517 bp assembled on 2011-02-07
GenBank Submission: KX804834
> BS23545.complete
GAAGTTATCAGTCGACATGACCAACGCAACGGACATCGGTGCTAACGACG
TGGAGATGGAGGTGGATCCAACGGCGGAGACGCTGGCTGACGAGAAGAAG
AACCAAGATGTGGCCGCCGTGCAGGAGATCCGCGAGCAGATTCGTCAGAT
TGAGAAGGGGGTAGCCTCGAAAGAGTCGCGCTTCATCCTGCGCGTCCTTC
GCAATTTGCCCAACACTCGTCGCAAGCTGAACGGCGTCGTCTTCCGGAAT
CTTGCACAGAGTATTTACCCCGCTGGTGCAGATCGTGAGGCGGCCGTGGC
TTTGATGCCCGCTGTGGAGAAAGACGCCACCGAGCTGCCCGATGTTCCCA
AAAAACAAGTTGCCACCAAGGCTCCAATCGCCGAGGTCGATGCCTACTTC
TACCTGCTCCTGCTGGTCAAGCTCATCGACGCCAGTGATTTAAAGCGGGC
CGGAATTAGCGCCGACGCCCTAATGGCCAAAATCTCCATCCAAAACCGAC
GCACCCTTGATCTGATTGGTGCCAAGTCCTACTTCTATTTTTCAAGAGTG
GCGGAGCTAAAAAACTCACTGGAAGGCATCCGATCCTTCCTGCACGCTCG
TCTGCGCACCGCTACGCTGCGTAATGATTTTGAAGGCCAGGCGGTGCTTA
TTAACTGTTTGCTCCGCAACTACTTGCACTATGCTTTGTACGACCAAGCC
GACAAGCTGGTAAAGAAATCCGTCTACCCGGAATCGGCCAGCAACAATGA
ATGGGCGCGTTTCCTGTACTATCTAGGTCGGATTAAGGCCGCTAAGCTGG
AGTACAGCGATGCCCACAAGCATCTGGTCCAGGCCCTGCGTAAGTCGCCG
CAGCACGCTGCCATTGGCTTTCGTCAGACGGTTCAAAAGCTAATTATCGT
TGTGGAGCTGCTTTTGGGCAACATCCCGGAGCGTGTGGTGTTCCGGCAAG
CCGGTCTTCGCCAATCTCTTGGTGCCTACTTCCAGCTCACGCAGGCCGTG
CGTCTGGGCAACTTGAAGCGCTTCGGCGACGTGGTATCCCAATACGGACC
CAAGTTCCAACTGGACCACACATTCACCCTGATTATCCGGCTGCGCCACA
ATGTGATCAAGACGGCAATCCGCTCCATCGGACTATCGTACTCACGCATC
TCGCCGCAAGACATTGCCAAGCGGCTAATGCTAGACTCCGCGGAGGATGC
CGAGTTTATTGTATCGAAGGCTATACGGGACGGCGTGATTGAGGCTACGT
TGGACCCAGCCCAGAATTTCATGCGCAGCAAGGAAAGTACGGACATCTAC
AGCACCCGGGAACCGCAGCTGGCCTTTCACGAGCGCATCTCGTTCTGCCT
GAACCTGCACAACCAGAGCGTTAAGGCCATGCGCTATCCCCCAAAGTCCT
ACGGCAAGGATTTGGAGAGCGCCGAGGAGAGACGCGAGCGGGAGCAGCAG
GACCTTGAGCTGGCCAAGGAGATGGCCGAGGATGATGAGGATGGTTTCTA
AAAGCTTTCTAGACCAT
BS23545.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:12:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn3-RA | 1485 | CG42641-PA | 1..1485 | 17..1501 | 7365 | 99.7 | Plus |
| Rpn3-RB | 1485 | CG42641-PB | 1..1485 | 17..1501 | 7365 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:12:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn3-RA | 1831 | CG42641-RA | 265..1749 | 17..1501 | 7365 | 99.7 | Plus |
| Rpn3-RB | 1692 | CG42641-RB | 126..1610 | 17..1501 | 7365 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:12:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19052278..19053599 | 180..1501 | 6550 | 99.7 | Plus |
| 2L | 23513712 | 2L | 19052054..19052217 | 17..180 | 820 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:12:06 has no hits.
BS23545.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-07 10:59:40 Download gff for
BS23545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn3-RA | 225..1707 | 17..1499 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:50:10 Download gff for
BS23545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn3-RB | 126..1608 | 17..1499 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:54:07 Download gff for
BS23545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn3-RB | 126..1608 | 17..1499 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:54:07 Download gff for
BS23545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19052054..19052217 | 17..180 | 100 | -> | Plus |
| 2L | 19052279..19053597 | 181..1499 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:50:10 Download gff for
BS23545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19052054..19052217 | 17..180 | 100 | -> | Plus |
| arm_2L | 19052279..19053597 | 181..1499 | 99 | | Plus |
BS23545.pep Sequence
Translation from 16 to 1500
> BS23545.pep
MTNATDIGANDVEMEVDPTAETLADEKKNQDVAAVQEIREQIRQIEKGVA
SKESRFILRVLRNLPNTRRKLNGVVFRNLAQSIYPAGADREAAVALMPAV
EKDATELPDVPKKQVATKAPIAEVDAYFYLLLLVKLIDASDLKRAGISAD
ALMAKISIQNRRTLDLIGAKSYFYFSRVAELKNSLEGIRSFLHARLRTAT
LRNDFEGQAVLINCLLRNYLHYALYDQADKLVKKSVYPESASNNEWARFL
YYLGRIKAAKLEYSDAHKHLVQALRKSPQHAAIGFRQTVQKLIIVVELLL
GNIPERVVFRQAGLRQSLGAYFQLTQAVRLGNLKRFGDVVSQYGPKFQLD
HTFTLIIRLRHNVIKTAIRSIGLSYSRISPQDIAKRLMLDSAEDAEFIVS
KAIRDGVIEATLDPAQNFMRSKESTDIYSTREPQLAFHERISFCLNLHNQ
SVKAMRYPPKSYGKDLESAEERREREQQDLELAKEMAEDDEDGF*
BS23545.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:01:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn3-PA | 494 | CG10484-PA | 1..494 | 1..494 | 2467 | 100 | Plus |
| Rpn3-PB | 494 | CG42641-PB | 1..494 | 1..494 | 2467 | 100 | Plus |
