BS23549.complete Sequence
1325 bp assembled on 2011-02-07
GenBank Submission: KX801912
> BS23549.complete
GAAGTTATCAGTCGACATGGCGGACACCAAGGAGACGGTTGTGGAGGGCG
TGGAGGCGTTGACACTAAATGGAAAACCGGACGCAGAACCCGTGGAAACG
GGCACGGATGCCCAGGCACAGGAGGGAGCCACTGCACCCACTGAAGATGT
TGTGGATCCATGGAATGTGGCCAGTAGTAATGACGCGGGCGTCGACTATG
ATAAGCTGATAAAACGGTTTGGCTCCAGCAAAATCGATGAGGAGCTTATC
GCGCGTTTCGAGAAAATCACGGGAAAGCCCGCCCACCACTTCATCCGAAG
GGGCATGTTCTTCTCGCACCGGGATCTTCATACGATTCTAACACTGCGCG
AACAGGGCAAACCCTTCTATTTGTACACTGGTCGCGGTCCCAGTTCCGGA
TCCCTGCACGTGGGCCACCTGGTGCCCTTCATCATGACCAAGTGGCTGCA
GGAGACCTTTGATGTGCCGCTGGTTATTCAATTGACCGACGACGAGAAGA
CCTTGTGGAAGGATCTGAAAGTGGAGGATGCCATCAAGCTTGGACGTGAA
AACGCCAAGGATATTGTGGCCATTGGATTCGATGTCAACAAGACGTTCAT
TTTTAATAACCTGGAATTCGTGGGAAAATGTCCTGCCATGTATCAGAACA
TCATTCGCATCCAGAAGTGCGTTACCTTCAATCAGGTCAAGGGCATCTTT
GGCTTCGGGGACTCAGACATCATTGGCAAGATTGGTTTCCCAGCCGCTCA
AGCAGCTCCCGCGATTTCCAGCACCTTCCCCTTCATCTTCGGCAACAGGA
AGGTGCACTGCCTCATCCCGTGCGCCATCGATCAGGACCCATATTTCCGC
ATGACTCGCGATGTGGCTCCACGTCTTGGTTTTCCCAAATGCGCGCTCAT
CCATTCGACCTTCTTCCCGGCGCTGCAGGGTGCCAAGACGAAGATGTCGG
CTAGCGACCAGAACTCGGCTGTTTATCTGACGGACACGCCCAAGCAGATT
AAGAACAAGATCAACAAGTACGCCTTCTCCGGAGGACGCGTATCTGTGGA
GGAGCACCGCAAGCTGGGCGGAGTTCCGGAAGTTGATGTCTCCTATCAGC
TGTTGAAGTTCTTCCTGGAGGACGATGCCAAGTTGGAGGAGGTGAGAGTG
GCTTACAGCAAAGGCGAAATGCTTACGGGCGAGATCAAGAAGCTGGCAGT
TGAGACGCTCACACCCATTGTGGAACAGCATCAGGCCGCCCGCAAGCTGA
TTACGGACGAAGTGCTGGACAAGTACTTCGAACTACGACCCCTGAAGTTC
GGAAGTTAGAAGCTTTCTAGACCAT
BS23549.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:22:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aats-trp-RB | 1293 | CG9735-PB | 1..1293 | 17..1309 | 6465 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:22:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aats-trp-RB | 1683 | CG9735-RB | 114..1408 | 17..1311 | 6475 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:22:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9265480..9266060 | 1204..624 | 2905 | 100 | Minus |
| 3R | 32079331 | 3R | 9266118..9266529 | 624..213 | 2060 | 100 | Minus |
| 3R | 32079331 | 3R | 9266596..9266791 | 212..17 | 980 | 100 | Minus |
| 3R | 32079331 | 3R | 9265302..9265410 | 1311..1203 | 545 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:22:32 has no hits.
BS23549.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-07 14:54:53 Download gff for
BS23549.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-trp-RB | 158..1450 | 17..1309 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:55:58 Download gff for
BS23549.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-trp-RB | 114..1406 | 17..1309 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:59:09 Download gff for
BS23549.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-trp-RB | 114..1406 | 17..1309 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:59:09 Download gff for
BS23549.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9265304..9265408 | 1205..1309 | 100 | <- | Minus |
| 3R | 9265480..9266059 | 625..1204 | 100 | <- | Minus |
| 3R | 9266118..9266529 | 213..624 | 100 | <- | Minus |
| 3R | 9266596..9266791 | 17..212 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:55:58 Download gff for
BS23549.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5091026..5091130 | 1205..1309 | 100 | <- | Minus |
| arm_3R | 5091202..5091781 | 625..1204 | 100 | <- | Minus |
| arm_3R | 5091840..5092251 | 213..624 | 100 | <- | Minus |
| arm_3R | 5092318..5092513 | 17..212 | 100 | | Minus |
BS23549.pep Sequence
Translation from 16 to 1308
> BS23549.pep
MADTKETVVEGVEALTLNGKPDAEPVETGTDAQAQEGATAPTEDVVDPWN
VASSNDAGVDYDKLIKRFGSSKIDEELIARFEKITGKPAHHFIRRGMFFS
HRDLHTILTLREQGKPFYLYTGRGPSSGSLHVGHLVPFIMTKWLQETFDV
PLVIQLTDDEKTLWKDLKVEDAIKLGRENAKDIVAIGFDVNKTFIFNNLE
FVGKCPAMYQNIIRIQKCVTFNQVKGIFGFGDSDIIGKIGFPAAQAAPAI
SSTFPFIFGNRKVHCLIPCAIDQDPYFRMTRDVAPRLGFPKCALIHSTFF
PALQGAKTKMSASDQNSAVYLTDTPKQIKNKINKYAFSGGRVSVEEHRKL
GGVPEVDVSYQLLKFFLEDDAKLEEVRVAYSKGEMLTGEIKKLAVETLTP
IVEQHQAARKLITDEVLDKYFELRPLKFGS*
BS23549.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:02:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aats-trp-PB | 430 | CG9735-PB | 1..430 | 1..430 | 2236 | 100 | Plus |
