Clone BS23554 Report

Search the DGRC for BS23554

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:235
Well:54
Vector:pDNR-Dual
Associated Gene/TranscriptCG32459-RA
Protein status:BS23554.pep: full length peptide match
Sequenced Size:1100

Clone Sequence Records

BS23554.complete Sequence

1100 bp assembled on 2011-02-07

GenBank Submission: KX802431

> BS23554.complete
GAAGTTATCAGTCGACATGGAACTGGAACGCGAACTGCCCACCGACGACG
CCTCCGTGGAGTTGGATGTGTCCGAACCATGGGGTGATGTGAGATCGTCA
GATAGCCAGCTTACCCTGAAGCAGAGTGAGAGCCAGGAGACGATAAGACC
ATTTGGGTATGAGTTAGCTGATCCATCCGAGCTTAGCTCCTACGACATTC
ACCTGGGTCTTCTAGTAGAGAAGGGTTTAATTGACATTAACTCATTGGAC
AAGCCCTCGAACGAGGACCTTACAGACTATCCGGACTATCCGGGTCTTTT
GTCCAGGTCGGCGGATCGTAGTGGAATTGCTGAGATAGTCAAAGAAATGC
GAAACGAATTCATGGACAAGCTGACCTCTAAGGCTAAGAGCTTCAAAGAA
ATCCTGATTAAGAAAGGCTTAATGGAGCCAAAGGACGAAAATCCTGCTAT
GCAGAAGAATGACTCTGAGAATAAAGCAAAGACCAAAGACGATTCTCAGA
TTCCAGATCGTAAGAACAAAGCGGGAAAACCTCTAGGAGAAGGCGACGTC
AGACGAAATGGTGAACTCGCCCTGCTCATCAATGAAATCAATCAGTTTAC
TTCTGGCATGGAGCAAGATCCGGACACTGCGGACTGGGCTCGGTTCCGGG
CCAACCTGCTGAAAATACATAAGTACTATGTGAGCGTCAATGAGCCGGAA
GGAAAAGGCCAAGAACGACCAAACAGCCAAATCGGCGCTGTCAGCGTTTT
AGAACCATCAGACATCAGCGGACCGAAGGAAGACCTCAGCAGTCGGGCCC
AGTACCTCCGTAAAAATCTCCGGGGTCTCGAATGCAAAATGCTTACCCTG
GACCACTCCGTTGATATCTTTAGCGACAAGTTCCATCGTAGTCTGGTCAC
TAAAGAGCATGTGGAGCGGGAAATGGTGTCGATTGCACTGGTGCGCGATA
AAATCGGACGACGCCTAAATCAGATGGAAGTGGAATTTCGCAGGGCCAAG
GAGGATTTATTTGATCGGGGCAGGAACCCAAAAAACCAAAGCTATATCGC
TTATTCAAAGAATAATCCTGATTGTGGAGCTTGAAAGCTTTCTAGACCAT

BS23554.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:22:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG32459-RA 1068 CG32459-PA 1..1068 17..1084 5340 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:22:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG32459-RA 1376 CG32459-RA 65..1132 17..1084 5340 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:22:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22854827..22855500 1084..411 3370 100 Minus
3L 28110227 3L 22855792..22855995 220..17 1020 100 Minus
3L 28110227 3L 22855547..22855740 412..219 970 100 Minus
Blast to na_te.dros performed on 2014-11-26 22:22:45 has no hits.

BS23554.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-07 14:54:54 Download gff for BS23554.complete
Subject Subject Range Query Range Percent Splice Strand
CG32459-RA 65..1131 17..1083 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:56:06 Download gff for BS23554.complete
Subject Subject Range Query Range Percent Splice Strand
CG32459-RA 65..1131 17..1083 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:59:16 Download gff for BS23554.complete
Subject Subject Range Query Range Percent Splice Strand
CG32459-RA 65..1131 17..1083 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:59:16 Download gff for BS23554.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22855792..22855995 17..220 100   Minus
3L 22855547..22855738 221..412 100 <- Minus
3L 22854828..22855498 413..1083 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:56:06 Download gff for BS23554.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22847928..22848598 413..1083 100 <- Minus
arm_3L 22848647..22848838 221..412 100 <- Minus
arm_3L 22848892..22849095 17..220 100   Minus

BS23554.pep Sequence

Translation from 16 to 1083

> BS23554.pep
MELERELPTDDASVELDVSEPWGDVRSSDSQLTLKQSESQETIRPFGYEL
ADPSELSSYDIHLGLLVEKGLIDINSLDKPSNEDLTDYPDYPGLLSRSAD
RSGIAEIVKEMRNEFMDKLTSKAKSFKEILIKKGLMEPKDENPAMQKNDS
ENKAKTKDDSQIPDRKNKAGKPLGEGDVRRNGELALLINEINQFTSGMEQ
DPDTADWARFRANLLKIHKYYVSVNEPEGKGQERPNSQIGAVSVLEPSDI
SGPKEDLSSRAQYLRKNLRGLECKMLTLDHSVDIFSDKFHRSLVTKEHVE
REMVSIALVRDKIGRRLNQMEVEFRRAKEDLFDRGRNPKNQSYIAYSKNN
PDCGA*

BS23554.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:02:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG32459-PA 355 CG32459-PA 1..355 1..355 1824 100 Plus