BS23557.complete Sequence
1112 bp assembled on 2011-02-07
GenBank Submission: KX800205
> BS23557.complete
GAAGTTATCAGTCGACATGGATCCTATTCTAAAGACCCTTACCGAGACCA
TGACCGTGGAGGCCATCGCAATCATCAAGGCCAAGCGCTTGGCGATGAAG
CAGAGCGTCGATAAGAACGCCATGCAGATGAGGGCCCAGGAGCGGGAGAA
GGGTCGTAATTTGGATAACATGCAAAAGGAACTGGGCAGGCGGGCCATGA
AGCGGGAGCGACCGTGCCGCGTTTTCGAGGAGCAGCTGCTGGGCGAGAAG
GAGATGACGACTGCTCAGGAATACCTCAAACTGGCTCACCATTCCATGAT
GCGTAGCTTGGACTCTACGGTGCCGGAATTATCACAGCTGGAAATGCCGC
CCCCGCCGGAGATCATGACAGAGCCGCCTTGGCCAAAGACCAAGTACAAT
CGCTATGGCCAGGAGAAATTCCTCAAGGCACAGCAGGAGTTCGGCATAAA
TCCGCAGGGCAGCAACTTGGAGAATTGCGCGACTTTTCACGAAAGTCAAA
AGGACAAGCGCAACCGATCTGTGAGTAGGGAAAGCATTGAAAGGTCGAGA
AGCAACAGCAAGGATCGTCGCTCATCGAAGCTTTACGCACGAATGCCCAT
CATTGTGGTTCCGGATGCAATGACCAGCATGATCAGCCTGAACAATATCA
AGACACTGCTCGAGGAGTTGCACTACGAGCCAGAGCGTAACGGCCGGCAG
TCTAACCCTCCTGAGTGTCGGCCCAAGGAGGTCATAGTCGAGCATCGATT
TCAGAACGAGCTTGTTAGCTACCGGGTCATCGACAACGTGACCAACCTAA
CACCCGTCGAATGGGATCGGGTGGTCGCCGTGTTCGCCATGGGACCCAAG
TGGCAATTCAAGGGCTGGCCGGATGGCGCTGACCCCGCCGCCATCTTCCA
CAAGGTCTGCGCCTTCCATCTGCACTTTAGGAATACGCCGATGTGCCCGG
AGCTGACCAAGCTGCAGGTGCACTCACTGGCTCTCTCGCCCACCGAGCGC
CATTCGGACAGCGGCATCATTATGGAGTTCTGGAACAGAGTGGACCGACA
CATGGCCGTCCATGCCCGTCAGTTTGCGTTTATCTGGCAAAAGTAGAAGC
TTTCTAGACCAT
BS23557.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:24:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6220-RA | 1080 | CG6220-PA | 1..1080 | 17..1096 | 5385 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:24:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6220-RA | 1427 | CG6220-RA | 91..1174 | 13..1096 | 5390 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:24:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13692538..13693279 | 754..13 | 3680 | 99.7 | Minus |
| 2R | 25286936 | 2R | 13691960..13692308 | 1096..748 | 1745 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:24:31 has no hits.
BS23557.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-07 15:39:39 Download gff for
BS23557.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6220-RA | 95..1174 | 17..1096 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:57:02 Download gff for
BS23557.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6220-RA | 95..1174 | 17..1096 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:00:04 Download gff for
BS23557.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6220-RA | 95..1174 | 17..1096 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:00:04 Download gff for
BS23557.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13691960..13692301 | 755..1096 | 100 | <- | Minus |
| 2R | 13692538..13693275 | 17..754 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:57:02 Download gff for
BS23557.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9579465..9579806 | 755..1096 | 100 | <- | Minus |
| arm_2R | 9580043..9580780 | 17..754 | 99 | | Minus |
BS23557.pep Sequence
Translation from 16 to 1095
> BS23557.pep
MDPILKTLTETMTVEAIAIIKAKRLAMKQSVDKNAMQMRAQEREKGRNLD
NMQKELGRRAMKRERPCRVFEEQLLGEKEMTTAQEYLKLAHHSMMRSLDS
TVPELSQLEMPPPPEIMTEPPWPKTKYNRYGQEKFLKAQQEFGINPQGSN
LENCATFHESQKDKRNRSVSRESIERSRSNSKDRRSSKLYARMPIIVVPD
AMTSMISLNNIKTLLEELHYEPERNGRQSNPPECRPKEVIVEHRFQNELV
SYRVIDNVTNLTPVEWDRVVAVFAMGPKWQFKGWPDGADPAAIFHKVCAF
HLHFRNTPMCPELTKLQVHSLALSPTERHSDSGIIMEFWNRVDRHMAVHA
RQFAFIWQK*
BS23557.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:04:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6220-PA | 359 | CG6220-PA | 1..359 | 1..359 | 1893 | 100 | Plus |
| hyx-PB | 538 | CG11990-PB | 170..530 | 5..347 | 440 | 31.3 | Plus |
| hyx-PA | 538 | CG11990-PA | 170..530 | 5..347 | 440 | 31.3 | Plus |
