BS23559.complete Sequence
1739 bp assembled on 2011-02-18
GenBank Submission: KX805576
> BS23559.complete
GAAGTTATCAGTCGACATGGAGAAGAGCACACTGAAGATCAATAATGAGG
ACCGGCAGAATTTTGTGGCCACGCGGATGAGTCTGCCGCTCTTTATGGTG
TCCCGCAATCGTATTAGAAAGGAAAATTTACCGCGAGTGGAGAAGCAATT
TAAGTTGGCCGGTCAGCATTACAATGAGTTCTGCCAGAAGGAAAACAGAC
GAGAGGCCTTCAGCAAAGCCACCTTTGATCACTACCGCCACATTACGGGT
TTCGACAAGACGCCAAAGAATCCGTATCCGGAACGTCGAAGGCTACACAT
CGATCGGAGTATGACCAAATGGAGGGGCTGGCAACTGCCCCCAAATCATT
ACGGAGTGCCCCCGGAACCGTATCTCCGACTGAAGGGCACCAAGGGCTCC
GTATTCGCCAAGCCGCACACGAATCATAGTCGCGTCTCCATTAAACCACC
GCCATATCATTTTTACGAACTTCCGGCGGAAATCGAGAGGCTCTTCAAGC
GCCCGAACTTGCAAAAGGGTATCTTCCTTTCAAATGCCCGCGATCGTCGA
CCGACCACACACGCTATGATTTCCAATCTGTCTGGCTGCTGGCGTAATCC
CAAGGATGCCGGTCCCTGCGACACCCATACAAACATCTTTGAGTTGGCCG
CAAATGCTGTACCCGTCACAAAGGCGCCACGCCCTAATCCGCACCTGTTT
CTGCGCCACTCCTGTGTGCCCACCAAGCCCAATCGACTGATCCGACGCCA
TATCAGCATGGAACCGGCTCCAGGTCGCTACTGCACCAGTTATCCGAACG
TGTGTCCCTGTCCGTCTGGTAAGACCAGTGTGCCGGGACTACAGCTGATG
ATTGATGACCAGAAGCGCCTGAAGTTTCGCCGCCTGCCATTTGAAAGGAT
CAGTCGAAAGCGACTCTGTGAGCCGGATTGGCGCCATGTCGAGGGCCAAG
GCCATCGTCATGTCTTCCTAATGGGACGCAAAGATAGACCCAAGCCCACC
AAGAAACCCACTTCTTCCAAAAAGCAGGGCAAGCCGATAAGCATGTATGC
CGATTCCAAGTACATTAACATGCTGAGCCAGCCGCAGCGACATCCCATTT
CCATTCGGGCGTATCCGGTTCCTCCGTACGTGCCCAAGATCACCTACAAC
TGTGCAGCCAAGCGGGTGATCCGCAAGCAATTGAAGAACAACAAGAAGAT
CGCCTTCAATAGTGGCCAGGAGCGATGGAAGGATGGCGAACGACCAATGC
AGCTGACCGCCCGCCAACTGGAGGCCATCAAGCAGAAGCTACCGCCGGAG
AGGCGACTGATGGACTATCCCATTGAGCTGCCGGAGGTGATTCCCAGTCG
ACTGACCCAGGTGCCCGATCACCAGAGGGTCACCTACATGCCCAAGTTGC
GCAAGCGTCTGTTCAAGTTCCTGCCGATTCCCGGTGCTCGGGTCCTGGTC
ACCGACAGCGATATACGTCCGGACATTGTTTTCGATCCGGAGCACCCGAC
CGGACTGTACCGGCGCAAGATCGATGAGACCGCGTTCTACAAGGACTCCG
TGTTGCGGGCGATGGAGAATAAGGAGGGTTCAGATGCTACCGGTTTGAAC
GAATCACAGTCGCAATCGCAGTCCCAATTGGATTCGCCCCATCAGTCCAT
GATCCGAAACAATGGTAGCGCTGCGGATCCGTTGGAACCCAAGAGCGCTT
CCCAGATATCATTCCATGAATAAAAGCTTTCTAGACCAT
BS23559.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:53:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13870-RA | 1707 | CG13870-PA | 1..1707 | 17..1723 | 8460 | 99.7 | Plus |
| CG13870-RB | 1677 | CG13870-PB | 145..1677 | 191..1723 | 7605 | 99.7 | Plus |
| CG13870-RB | 1677 | CG13870-PB | 1..145 | 17..161 | 710 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:53:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13870-RA | 1811 | CG13870-RA | 64..1774 | 15..1725 | 8480 | 99.7 | Plus |
| CG13870-RB | 1921 | CG13870-RB | 210..1744 | 191..1725 | 7615 | 99.7 | Plus |
| CG13870-RB | 1921 | CG13870-RB | 64..210 | 15..161 | 720 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:53:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20344650..20345841 | 534..1725 | 5900 | 99.7 | Plus |
| 2R | 25286936 | 2R | 20344195..20344537 | 191..533 | 1715 | 100 | Plus |
| 2R | 25286936 | 2R | 20343908..20343998 | 15..105 | 440 | 98.9 | Plus |
| 2R | 25286936 | 2R | 20344056..20344142 | 105..191 | 435 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 12:53:43 has no hits.
BS23559.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-18 10:40:23 Download gff for
BS23559.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13870-RA | 66..1770 | 17..1721 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:25:21 Download gff for
BS23559.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13870-RA | 66..1770 | 17..1721 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:06:55 Download gff for
BS23559.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13870-RA | 66..1770 | 17..1721 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:06:55 Download gff for
BS23559.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20344056..20344142 | 105..191 | 100 | -> | Plus |
| 2R | 20343910..20343997 | 17..104 | 98 | -> | Plus |
| 2R | 20344196..20344537 | 192..533 | 100 | -> | Plus |
| 2R | 20344650..20345837 | 534..1721 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:25:21 Download gff for
BS23559.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16231415..16231502 | 17..104 | 98 | -> | Plus |
| arm_2R | 16231561..16231647 | 105..191 | 100 | -> | Plus |
| arm_2R | 16231701..16232042 | 192..533 | 100 | -> | Plus |
| arm_2R | 16232155..16233342 | 534..1721 | 99 | | Plus |
BS23559.pep Sequence
Translation from 16 to 1722
> BS23559.pep
MEKSTLKINNEDRQNFVATRMSLPLFMVSRNRIRKENLPRVEKQFKLAGQ
HYNEFCQKENRREAFSKATFDHYRHITGFDKTPKNPYPERRRLHIDRSMT
KWRGWQLPPNHYGVPPEPYLRLKGTKGSVFAKPHTNHSRVSIKPPPYHFY
ELPAEIERLFKRPNLQKGIFLSNARDRRPTTHAMISNLSGCWRNPKDAGP
CDTHTNIFELAANAVPVTKAPRPNPHLFLRHSCVPTKPNRLIRRHISMEP
APGRYCTSYPNVCPCPSGKTSVPGLQLMIDDQKRLKFRRLPFERISRKRL
CEPDWRHVEGQGHRHVFLMGRKDRPKPTKKPTSSKKQGKPISMYADSKYI
NMLSQPQRHPISIRAYPVPPYVPKITYNCAAKRVIRKQLKNNKKIAFNSG
QERWKDGERPMQLTARQLEAIKQKLPPERRLMDYPIELPEVIPSRLTQVP
DHQRVTYMPKLRKRLFKFLPIPGARVLVTDSDIRPDIVFDPEHPTGLYRR
KIDETAFYKDSVLRAMENKEGSDATGLNESQSQSQSQLDSPHQSMIRNNG
SAADPLEPKSASQISFHE*
BS23559.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:30:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13870-PA | 568 | CG13870-PA | 1..568 | 1..568 | 3061 | 100 | Plus |
| CG13870-PB | 558 | CG13870-PB | 1..558 | 1..568 | 2978 | 98.2 | Plus |
