Clone BS23560 Report

Search the DGRC for BS23560

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:235
Well:60
Vector:pDNR-Dual
Associated Gene/TranscriptCG5906-RA
Protein status:BS23560.pep: full length peptide match
Sequenced Size:642

Clone Sequence Records

BS23560.complete Sequence

642 bp assembled on 2011-01-25

GenBank Submission: KX803321

> BS23560.complete
GAAGTTATCAGTCGACATGGCTCTACGAGTGCTATGGAGGCGAATGACGA
ATGCCATGGACCGGTTTCATCAGATAGCCTTCAGCCCAAAGTATCTCCTA
TTTACGAACATCGGGATCTCTGTGGGCCTGAGCATGGTGGGCGATACCAT
GGAGCAGTCCTATGAGCGCCTCATAGGGGAGCTTCCGGATTGGAACCGAA
CGCGTACCATTAGGATGGGCATATCCGGGTTGACGGTGGGCCTGGTGTGC
CACTATTGGTACCAACATCTGGACTACTTGTTTCCGAAGCGCACCTATAA
GGTGGTTGTAGTCAAGATTTTGCTGGACCAGTTCATCTGCTCACCCTTTT
ACATCGCCGTATTCTTTCTCACAATGGCCATTCTGGAGGACAATACGTGG
GAGGAGCTGGAGCAGGAGATTAGGGAGAAGGCCTTAGTACTGTACGCTGC
TGAGTGGACCGTGTGGCCATTGGCACAGTTCATCAACTTTCTGCTGATCA
AGCCGCAGTACAGGGTATTCTATGACAACACCATCAGTTTGGGCTACGAT
ATCTATACGTCTCAAGTTAAGTATCGTAAGAAGCCGGAGCCAAAAGATAA
TTCGTAAAAGCTTTCTAGACCATTCGTGTGGCGCGCAAAGGG

BS23560.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:34:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG5906-RA 591 CG5906-PA 1..591 17..607 2910 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:34:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG5906-RA 849 CG5906-RA 69..660 17..608 2915 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:34:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11870646..11871237 608..17 2915 99.5 Minus
Blast to na_te.dros performed on 2014-11-26 16:34:45 has no hits.

BS23560.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:16:14 Download gff for BS23560.complete
Subject Subject Range Query Range Percent Splice Strand
CG5906-RA 69..660 17..608 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:00:25 Download gff for BS23560.complete
Subject Subject Range Query Range Percent Splice Strand
CG5906-RA 69..660 17..608 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:07:45 Download gff for BS23560.complete
Subject Subject Range Query Range Percent Splice Strand
CG5906-RA 69..660 17..608 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:07:45 Download gff for BS23560.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11870646..11871237 17..608 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:00:25 Download gff for BS23560.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11863746..11864337 17..608 99   Minus

BS23560.pep Sequence

Translation from 16 to 606

> BS23560.pep
MALRVLWRRMTNAMDRFHQIAFSPKYLLFTNIGISVGLSMVGDTMEQSYE
RLIGELPDWNRTRTIRMGISGLTVGLVCHYWYQHLDYLFPKRTYKVVVVK
ILLDQFICSPFYIAVFFLTMAILEDNTWEELEQEIREKALVLYAAEWTVW
PLAQFINFLLIKPQYRVFYDNTISLGYDIYTSQVKYRKKPEPKDNS*

BS23560.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:49:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG5906-PA 196 CG5906-PA 1..196 1..196 1041 100 Plus
CG1662-PB 245 CG1662-PB 65..236 17..188 538 57.6 Plus
CG1662-PA 245 CG1662-PA 65..236 17..188 538 57.6 Plus
CG32262-PA 273 CG32262-PA 63..238 16..186 271 35.8 Plus
CG32263-PA 206 CG32263-PA 39..199 25..186 236 35.8 Plus