BS23560.complete Sequence
642 bp assembled on 2011-01-25
GenBank Submission: KX803321
> BS23560.complete
GAAGTTATCAGTCGACATGGCTCTACGAGTGCTATGGAGGCGAATGACGA
ATGCCATGGACCGGTTTCATCAGATAGCCTTCAGCCCAAAGTATCTCCTA
TTTACGAACATCGGGATCTCTGTGGGCCTGAGCATGGTGGGCGATACCAT
GGAGCAGTCCTATGAGCGCCTCATAGGGGAGCTTCCGGATTGGAACCGAA
CGCGTACCATTAGGATGGGCATATCCGGGTTGACGGTGGGCCTGGTGTGC
CACTATTGGTACCAACATCTGGACTACTTGTTTCCGAAGCGCACCTATAA
GGTGGTTGTAGTCAAGATTTTGCTGGACCAGTTCATCTGCTCACCCTTTT
ACATCGCCGTATTCTTTCTCACAATGGCCATTCTGGAGGACAATACGTGG
GAGGAGCTGGAGCAGGAGATTAGGGAGAAGGCCTTAGTACTGTACGCTGC
TGAGTGGACCGTGTGGCCATTGGCACAGTTCATCAACTTTCTGCTGATCA
AGCCGCAGTACAGGGTATTCTATGACAACACCATCAGTTTGGGCTACGAT
ATCTATACGTCTCAAGTTAAGTATCGTAAGAAGCCGGAGCCAAAAGATAA
TTCGTAAAAGCTTTCTAGACCATTCGTGTGGCGCGCAAAGGG
BS23560.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:34:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5906-RA | 591 | CG5906-PA | 1..591 | 17..607 | 2910 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:34:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5906-RA | 849 | CG5906-RA | 69..660 | 17..608 | 2915 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:34:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11870646..11871237 | 608..17 | 2915 | 99.5 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:34:45 has no hits.
BS23560.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:16:14 Download gff for
BS23560.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5906-RA | 69..660 | 17..608 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:00:25 Download gff for
BS23560.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5906-RA | 69..660 | 17..608 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:07:45 Download gff for
BS23560.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5906-RA | 69..660 | 17..608 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:07:45 Download gff for
BS23560.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11870646..11871237 | 17..608 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:00:25 Download gff for
BS23560.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11863746..11864337 | 17..608 | 99 | | Minus |
BS23560.pep Sequence
Translation from 16 to 606
> BS23560.pep
MALRVLWRRMTNAMDRFHQIAFSPKYLLFTNIGISVGLSMVGDTMEQSYE
RLIGELPDWNRTRTIRMGISGLTVGLVCHYWYQHLDYLFPKRTYKVVVVK
ILLDQFICSPFYIAVFFLTMAILEDNTWEELEQEIREKALVLYAAEWTVW
PLAQFINFLLIKPQYRVFYDNTISLGYDIYTSQVKYRKKPEPKDNS*
BS23560.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:49:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5906-PA | 196 | CG5906-PA | 1..196 | 1..196 | 1041 | 100 | Plus |
CG1662-PB | 245 | CG1662-PB | 65..236 | 17..188 | 538 | 57.6 | Plus |
CG1662-PA | 245 | CG1662-PA | 65..236 | 17..188 | 538 | 57.6 | Plus |
CG32262-PA | 273 | CG32262-PA | 63..238 | 16..186 | 271 | 35.8 | Plus |
CG32263-PA | 206 | CG32263-PA | 39..199 | 25..186 | 236 | 35.8 | Plus |