BS23565.complete Sequence
648 bp assembled on 2011-01-25
GenBank Submission: KX806397
> BS23565.complete
GAAGTTATCAGTCGACATGGCCGTCCTGTACCTGCTGGGATGGGTTTCGC
TGGCCATACAGATCGTGTTCCTCACCCTGTCGATTGTGGCTGGTCTCTAT
TATCTGGCGGAGCTGGCCGAGGAGTACACGACGGCGGCTAGGAAGTGCAT
CCTATTTCTGATCAGCTTCACGATCTTCGTCTACATCCTGCTGCTGCTGT
TCGAGGACCTGCCGTGGAGCCTTATCATCTGCGGACTGGTGGCGCAGGGC
TTCCACCTGGGCATCATGAGTGGATTCCCCTTCGTGCGCCTGCTCTCGCT
GCCGCTGCTGGGCTCCCTGGCCATGCTGGTGGTCAATCACTTCCTGGCCT
TCCAGCATTTCGTCACTGTCTATGTGCCTTTCACGCAGGTGCTGGCTTAT
TTTACCATCTGCATGTGGATCGTGCCCTTCGCCCTGTTCGTCTCGCTGAG
TGCGAATGACAGTGTCCTGCCCACCACCGTCAGCGACCAGAGCCGGCGCA
GTCCGGACGTGGTCAGCAACTACTTCTCGCGCAACAAGAAGCAGGGCCTG
CTGTCGCTGTTCCAGTATCTGAAAGAGGCCCTGCTCCCTGGGCGGACCAA
GAAGGCCTTCTAGAAGCTTTCTAGACCATTCGTGGGGCGCGCAAAGGG
BS23565.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:34:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3500-RB | 597 | CG3500-PB | 1..597 | 17..613 | 2955 | 99.7 | Plus |
| CG3500-RA | 597 | CG3500-PA | 1..597 | 17..613 | 2955 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:34:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3500-RB | 774 | CG3500-RB | 104..701 | 17..614 | 2960 | 99.7 | Plus |
| CG3500-RA | 948 | CG3500-RA | 278..875 | 17..614 | 2960 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:34:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23356853..23357158 | 391..86 | 1530 | 100 | Minus |
| 2R | 25286936 | 2R | 23356445..23356673 | 614..386 | 1115 | 99.1 | Minus |
| 2R | 25286936 | 2R | 23357219..23357288 | 86..17 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:34:55 has no hits.
BS23565.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:16:15 Download gff for
BS23565.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3500-RA | 278..882 | 17..622 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:00:30 Download gff for
BS23565.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3500-RA | 278..882 | 17..622 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:07:48 Download gff for
BS23565.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3500-RA | 278..882 | 17..622 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:07:48 Download gff for
BS23565.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23356438..23356670 | 389..622 | 97 | <- | Minus |
| 2R | 23356856..23357157 | 87..388 | 100 | <- | Minus |
| 2R | 23357219..23357288 | 17..86 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:00:30 Download gff for
BS23565.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19243961..19244193 | 389..622 | 97 | <- | Minus |
| arm_2R | 19244379..19244680 | 87..388 | 100 | <- | Minus |
| arm_2R | 19244742..19244811 | 17..86 | 100 | | Minus |
BS23565.pep Sequence
Translation from 16 to 612
> BS23565.pep
MAVLYLLGWVSLAIQIVFLTLSIVAGLYYLAELAEEYTTAARKCILFLIS
FTIFVYILLLLFEDLPWSLIICGLVAQGFHLGIMSGFPFVRLLSLPLLGS
LAMLVVNHFLAFQHFVTVYVPFTQVLAYFTICMWIVPFALFVSLSANDSV
LPTTVSDQSRRSPDVVSNYFSRNKKQGLLSLFQYLKEALLPGRTKKAF*
BS23565.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:07:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3500-PB | 198 | CG3500-PB | 1..198 | 1..198 | 999 | 100 | Plus |
| CG3500-PA | 198 | CG3500-PA | 1..198 | 1..198 | 999 | 100 | Plus |
