BS23566.complete Sequence
857 bp assembled on 2011-03-18
GenBank Submission: KX803436
> BS23566.complete
GAAGTTATCAGTCGACATGCCATGCCTGTCAAATCCGGAAATCGAGATTA
TGCTCTATTGCCAGGCAATGTGCTTATTCCTGCTTAGCCTTGCTTGCGTT
TCGCGGAGCCACATAATCATGATAAGCGACTCGGATCCTGTTGTGGCTCG
ATTGTATGAGCCAGCAAGCGAAAAGAAGCAGACTGCAAGTGGAGGATCAT
CGGAAGGGTGTGAAACAAGTTCTGCTGTGCAAAATTCTTGTGGCCTTAGC
CAAAAGAATGCCAAGAGCAAGGCTTCCAGCATTGCAATTAAGGCCGCCCA
GGACGCCAAGGCGGCCAATGACGCCCAGATGGCCGCCGGAGAGGCAGCCT
CACTCCAAGTGAAACAGGATCTGGCCGAGAAGGCGGTCCAAGCTGCTCGA
GCCGCGGAGGCAGCTCTTGCTGGCAAGCAACAGATCATGGAGCAACTGGA
GCTGGAGGAAAAGGAGGCGGTGGCCGTTGTGGACGAGGTTAAGAACTCAC
TCCACAGCACACAGGTGAACGCAGAATCTGCCATGTTAGCGTTTTCCGAA
GCCAAGATTCAGCTGGACCAACTGAAAGTCCTTTTGGCTGAGGCCACCGC
TCAAATGACCAACATTGAAACTTTCGCTAATGGTGCCCAATTGGAGATGG
ATGAGAAGGGGCAGCTGTTGGAGGCGGCCAATCGGAGAGTGGAGAGCATC
TCCAGACAAGTGGTCGCTGCCAGGCAGGATTACGACAAGACCAAGAAGGC
TGCCTATAAGGCGGCTTGTGCGGCAGTGGAGGCCAAGCAAAAGGCTCAAA
GGATGCAAAGGGCGATTAGCTCTGCATCCTCTTCAAGCTAGAAGCTTTCT
AGACCAT
BS23566.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:34:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14841-RA | 825 | CG14841-PA | 1..825 | 17..841 | 4125 | 100 | Plus |
| CG14840-RA | 903 | CG14840-PA | 723..792 | 733..802 | 200 | 85.7 | Plus |
| CG14840-RA | 903 | CG14840-PA | 259..447 | 269..457 | 195 | 73.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:34:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14841-RA | 956 | CG14841-RA | 3..829 | 17..843 | 4135 | 100 | Plus |
| CG14840-RA | 1006 | CG14840-RA | 753..822 | 733..802 | 200 | 85.7 | Plus |
| CG14840-RA | 1006 | CG14840-RA | 289..477 | 269..457 | 195 | 73.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:34:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14261518..14262228 | 843..133 | 3555 | 100 | Minus |
| 3R | 32079331 | 3R | 14262299..14262416 | 134..17 | 590 | 100 | Minus |
| 3R | 32079331 | 3R | 14260392..14260461 | 802..733 | 200 | 85.7 | Minus |
| 3R | 32079331 | 3R | 14260737..14260925 | 457..269 | 195 | 73.5 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:34:55 has no hits.
BS23566.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-18 12:09:27 Download gff for
BS23566.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14841-RA | 3..827 | 17..841 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:37:51 Download gff for
BS23566.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14841-RA | 3..827 | 17..841 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:56:01 Download gff for
BS23566.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14841-RA | 3..827 | 17..841 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:56:01 Download gff for
BS23566.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14261520..14262227 | 134..841 | 100 | <- | Minus |
| 3R | 14262300..14262416 | 17..133 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:37:51 Download gff for
BS23566.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10087242..10087949 | 134..841 | 100 | <- | Minus |
| arm_3R | 10088022..10088138 | 17..133 | 100 | | Minus |
BS23566.pep Sequence
Translation from 16 to 840
> BS23566.pep
MPCLSNPEIEIMLYCQAMCLFLLSLACVSRSHIIMISDSDPVVARLYEPA
SEKKQTASGGSSEGCETSSAVQNSCGLSQKNAKSKASSIAIKAAQDAKAA
NDAQMAAGEAASLQVKQDLAEKAVQAARAAEAALAGKQQIMEQLELEEKE
AVAVVDEVKNSLHSTQVNAESAMLAFSEAKIQLDQLKVLLAEATAQMTNI
ETFANGAQLEMDEKGQLLEAANRRVESISRQVVAARQDYDKTKKAAYKAA
CAAVEAKQKAQRMQRAISSASSSS*
BS23566.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:07:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14841-PA | 274 | CG14841-PA | 1..274 | 1..274 | 1317 | 100 | Plus |
| CG14840-PA | 300 | CG14840-PA | 55..267 | 59..265 | 559 | 59.6 | Plus |
| CG34459-PC | 305 | CG34459-PC | 75..295 | 57..260 | 473 | 48.9 | Plus |
| CG34459-PB | 305 | CG34459-PB | 75..295 | 57..260 | 473 | 48.9 | Plus |
| CG34459-PA | 305 | CG34459-PA | 75..295 | 57..260 | 473 | 48.9 | Plus |
