BS23568.complete Sequence
1886 bp assembled on 2011-02-18
GenBank Submission: KX803270
> BS23568.complete
GAAGTTATCAGTCGACATGGCTCGGTTGATGTTGCGAATGAAAGTATCCA
TGATACTGACCGGTGTATTTTTTACGCTTTACTTTGGGCTCCAGCCAGTA
ACAGAGTGGTTTGAAAGAAAGGATCTAGTGACTGCACCCGAGGAAGTAGT
CTTTGTGAACACCTCCGTGTGTCATGTAAGTGGCCAATGGAAGCCGACGG
CGTTTTACTCTGCGATTGAGCCGGTCAACAAGTTGCGGTGTCGGATGACC
CAACTACTTACTGCAATAACTCAAGACGGTAGCAATTTTCTGGAGGCCAA
AAGGATCTCAGAGGACTTGAGTTGTAGGTATTGGCTAAAATCTGGACACA
CCCGCAACCATTCAGGGCACTACACAGCGTATGGACACTTCGATCTGAAA
AGGGGTGCGACCAGAAAAATTAAGATCGGCACTGGAGAGCAGATAGTTCG
CATTAGGTGCTCGGACAAGTTTAAAGCAAGCAAATACCATGACGTGCTTT
ATTTTTTGTCTCCGCCCGATCCCAAATTGATGTCGACAGAGAGTTCTGAG
AAATTGTCTGTGATGGTCTTGGGCATTGACTCAGTTTCCCACATGCATTT
TGTGCGATATTTTCCCCTCGTGATGGCCTTTTTAGAAAACCACCCGCACA
CGAAATTCTTCGGCTACAGTCGTGTGGGCCTGGATGCAAATGCCAATTTA
GTCCCTTTTCTAGGTGGCAAAAGCAGTCGAGCAGCTGGTTCAGACATTCT
CTCCGACGAGAAGGCGTGGCTGTGGGACAGCTTCAAGATGGAAGGCTACA
GCACTGCCTACGGTGAGGATAACGCCAAAGGGATCCTCTCCAATAGGAAC
GGGGATAAAGAGCTTCCCAAAAGTCCAGTTGATTTTGATTTGACTCCTGT
AATTGTCGAGATGAATAATCACACGCGCTATAGCATCGATCTGAAGGAGA
TGATCCACTGCACGGCAGGCCGTAAATTCCAAGATGTTCTCAGGGACTTT
GTACTCCAACTGGTACCCTATATGCAAGGAATGCCATTTTTCTCGTTTTT
CTGGCAGTCGCAGGGTGTCCAGGAGTACTATGAATACGCTTGGCACTTGG
ATCTTTCCTATATGATGCTTTTGAAGAAGTTGCTGGACGCGGATATTCTG
AACAACACTCTGCTGTTTCTGATGTCCGACCACGGCCTGCGAGCTGGTGA
ATACCGCATGAGCCTTCAGGGCATGAAGGAAGAATCACAGCCTTTAATGG
TGGCAATATACCCGGAATGGTTGAAGCGGAAATATCCTTTGGCAGTGGGG
AACCTCGAAAGCAACGCGCATAGTCTGATCACTCCGTACGATCTTCGCGA
AACCTTAGCGGATGTTATAGCTCTCGGTCAACTGAAGGACGCCAACATAG
AGGTCAGCATGAAAAGGCTCCAGTCACATCCCCCAAATAGGTTGCCCAGG
GGCATTAGCCTCTTTCTTCCGATTCCCGACCACAGGACCTGCGACTTGGC
TCACATACCTTCCCTCTTCTGCTTTTGCCGGGAGCTCACCGAAGTTCCCA
CGGACGACGGTCTGGTCCTTCGAAGCAGTCGCTTTATGGTGGAATCCATC
AACCAGCTTATCAAACCATTCGGGCAGTGCCGGCAACTGAAGCTCGAAAT
GGTTTTACTGGCCCACTTCTTGGACTTCGGCGAAGAGTCCTTCGTCTACG
AGTTAAGGCTGCGGGTGCGGACGAGTCCGGGGAATGGGGTTTACGAGGCC
ACCGTTCGTCTGTCGGACGTTCTACTGTTGACCAGTCCCATCAGCCGGGT
CAGTCATTACCTGGGGCAGTCCCACTGCATCGGCGATCCAGACCTGCAAA
TATTTTGCTTGTGTATTTGAAAGCTTTCTAGACCAT
BS23568.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:28:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1428-RA | 1854 | CG1428-PA | 1..1854 | 17..1870 | 9210 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:28:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1428-RA | 2031 | CG1428-RA | 65..1918 | 17..1870 | 9210 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:28:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21906353..21908206 | 17..1870 | 9210 | 99.8 | Plus |
Blast to na_te.dros performed 2014-11-26 15:28:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hobo | 2959 | hobo DMHFL1 2959bp Derived from M69216 (g157606) (Rel. 41, Last updated, Version 3). | 30..116 | 677..590 | 113 | 60.2 | Minus |
BS23568.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-18 10:40:46 Download gff for
BS23568.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1428-RA | 65..1917 | 17..1869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:53:34 Download gff for
BS23568.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1428-RA | 65..1917 | 17..1869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:13:57 Download gff for
BS23568.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1428-RA | 65..1917 | 17..1869 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:13:57 Download gff for
BS23568.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21906353..21908205 | 17..1869 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:53:34 Download gff for
BS23568.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21906353..21908205 | 17..1869 | 99 | | Plus |
BS23568.pep Sequence
Translation from 16 to 1869
> BS23568.pep
MARLMLRMKVSMILTGVFFTLYFGLQPVTEWFERKDLVTAPEEVVFVNTS
VCHVSGQWKPTAFYSAIEPVNKLRCRMTQLLTAITQDGSNFLEAKRISED
LSCRYWLKSGHTRNHSGHYTAYGHFDLKRGATRKIKIGTGEQIVRIRCSD
KFKASKYHDVLYFLSPPDPKLMSTESSEKLSVMVLGIDSVSHMHFVRYFP
LVMAFLENHPHTKFFGYSRVGLDANANLVPFLGGKSSRAAGSDILSDEKA
WLWDSFKMEGYSTAYGEDNAKGILSNRNGDKELPKSPVDFDLTPVIVEMN
NHTRYSIDLKEMIHCTAGRKFQDVLRDFVLQLVPYMQGMPFFSFFWQSQG
VQEYYEYAWHLDLSYMMLLKKLLDADILNNTLLFLMSDHGLRAGEYRMSL
QGMKEESQPLMVAIYPEWLKRKYPLAVGNLESNAHSLITPYDLRETLADV
IALGQLKDANIEVSMKRLQSHPPNRLPRGISLFLPIPDHRTCDLAHIPSL
FCFCRELTEVPTDDGLVLRSSRFMVESINQLIKPFGQCRQLKLEMVLLAH
FLDFGEESFVYELRLRVRTSPGNGVYEATVRLSDVLLLTSPISRVSHYLG
QSHCIGDPDLQIFCLCI*
BS23568.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:23:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1428-PA | 617 | CG1428-PA | 1..617 | 1..617 | 3251 | 100 | Plus |
| CG3123-PA | 634 | CG3123-PA | 47..634 | 42..617 | 998 | 38.1 | Plus |
| CG14731-PA | 641 | CG14731-PA | 51..640 | 43..616 | 874 | 35.7 | Plus |
| CG16854-PC | 677 | CG16854-PC | 124..675 | 87..616 | 768 | 33.4 | Plus |
| CG16854-PB | 705 | CG16854-PB | 152..703 | 87..616 | 768 | 33.4 | Plus |
