BS23574.complete Sequence
1385 bp assembled on 2011-02-07
GenBank Submission: KX804319
> BS23574.complete
GAAGTTATCAGTCGACATGGAATGTCAGGAACTCAAGCTCGTCACGGATA
AAGAACTCATTGATAAGAATCTTGAAAAAGAGGAGCAAACATGCAACTTA
GTCCCAGCCTGGAGCCCTAGGAATCCCTTGGAAAACAGCATCGATTGCCG
CGAGAAGTCAATTGTGGAAAACATAAATGCAGACCAGGATGCCATTGCCA
AAATCCAATATCTTAGTTCGGAACATGCCAAGCTGGATAAGTATTTAGAT
AATCAGGAGCAGGATGAATCACTTCGCAAATATCTTGTCGTTGGAGTTCA
TTGGGTTTCTCTGCTCACGGAACATGTGTTGAGCCATCCGTTTCTAGTAT
TGCGTTGGCAGTGTCAGGTTTATAATGCCTCCAAGTGTTACCACTTGCAT
CCTTTTACCCTGCTGCCCTGTATTGTCCACTTGCACAGACGCCAAGGACT
AACGACACTATGGAAGGGAATGGGCAGCTGCTTGCTTGTTCGTGGAATGT
CCTGCGCCATTGACGATGTAATATCGAAACTCAGCAGTTGGCCCAAGGAA
TTGGATAGTCGAACGACCTTAAAGCGATTTGGCCAGCATGTCCTTCTGAA
ATCTGTAAGCATCGCTTTGGTTTTGCCCTTCCACACCGTTTCCTTGGTGA
AGACAGTGCAAAGCGGCATTGCCAGCGACAAAACAGGACTTTTTGATGTC
CTTCGAGAAGGTGGAGCTCGCATTTTCTCATGGAGGTCCCCGCAAAATAC
TCGAATGCTACCAACTTGGGCATTAATCGGTCCGAGTATTTCGATTGGCA
TTACAAAGTATCTCTTCAACCTGTTAATACATGGCGTATCCACTCGAATG
ATGCAGAGGAGAATGCTGGAAAATCGATGTGAAAAAAACCCCGACAATAA
GCTTGAAAACCAAAATGCGAAAACTTATGCCGGACTTATAGCCATGCTTA
CCACTGAGGTTGTATTCTTCCCTCTCGAAACCATATTGCATCGCCTAGAA
CTGCAGGGCACCCGAACCATAATCGATAATCTTGATACTGGTTATTCAGT
TGTCCCGGTTTTGACAGACTATCGTGGATTATTCGATTGCTACAGGGTAA
CCGTTATTTCAGAGGGAGCTGCTGGACTCTACAAAGGCTTCGGAGCAATG
ATCCTTCAATTTGTCGCACAGGTTGCTATAATAAAACTGGCCAAGTGGAC
AGCGGATCAAATTGCTGCTGGTATATTGAATCGTCCAACATCCCGCACAG
TACAGCCCTACAATTTCGATTCCCTCTCCTGCAACAAGAGCTCTACGACA
AAATCGCCAAGCATTTCCAGCATCGATGTGGAACTGACTAGCTTAGGAAA
GTATTCACTAGATGAATAAAAGCTTTCTAGACCAT
BS23574.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:18:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5755-RA | 1353 | CG5755-PA | 1..1353 | 17..1369 | 6750 | 99.9 | Plus |
| CG8931-RA | 1266 | CG8931-PA | 178..745 | 287..854 | 425 | 71.7 | Plus |
| CG8931-RA | 1266 | CG8931-PA | 801..1098 | 901..1198 | 230 | 71.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:18:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5755-RA | 1553 | CG5755-RA | 125..1478 | 17..1370 | 6755 | 99.9 | Plus |
| CG8931-RA | 1454 | CG8931-RA | 326..893 | 287..854 | 425 | 71.7 | Plus |
| CG8931-RA | 1454 | CG8931-RA | 949..1246 | 901..1198 | 230 | 71.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:18:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18096692..18098045 | 17..1370 | 6755 | 99.9 | Plus |
| X | 23542271 | X | 15984222..15984537 | 287..602 | 350 | 74.1 | Plus |
| X | 23542271 | X | 15984900..15985197 | 901..1198 | 230 | 71.8 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:18:16 has no hits.
BS23574.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-07 13:51:07 Download gff for
BS23574.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5755-RA | 125..1475 | 17..1367 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:53:38 Download gff for
BS23574.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5755-RA | 125..1475 | 17..1367 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:57:06 Download gff for
BS23574.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5755-RA | 125..1475 | 17..1367 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:57:06 Download gff for
BS23574.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18096692..18098042 | 17..1367 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:53:38 Download gff for
BS23574.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18096692..18098042 | 17..1367 | 99 | | Plus |
BS23574.pep Sequence
Translation from 16 to 1368
> BS23574.pep
MECQELKLVTDKELIDKNLEKEEQTCNLVPAWSPRNPLENSIDCREKSIV
ENINADQDAIAKIQYLSSEHAKLDKYLDNQEQDESLRKYLVVGVHWVSLL
TEHVLSHPFLVLRWQCQVYNASKCYHLHPFTLLPCIVHLHRRQGLTTLWK
GMGSCLLVRGMSCAIDDVISKLSSWPKELDSRTTLKRFGQHVLLKSVSIA
LVLPFHTVSLVKTVQSGIASDKTGLFDVLREGGARIFSWRSPQNTRMLPT
WALIGPSISIGITKYLFNLLIHGVSTRMMQRRMLENRCEKNPDNKLENQN
AKTYAGLIAMLTTEVVFFPLETILHRLELQGTRTIIDNLDTGYSVVPVLT
DYRGLFDCYRVTVISEGAAGLYKGFGAMILQFVAQVAIIKLAKWTADQIA
AGILNRPTSRTVQPYNFDSLSCNKSSTTKSPSISSIDVELTSLGKYSLDE
*
BS23574.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:01:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5755-PA | 450 | CG5755-PA | 1..450 | 1..450 | 2335 | 100 | Plus |
| CG8931-PA | 421 | CG8931-PA | 6..421 | 2..449 | 1285 | 57.8 | Plus |
