BS23577.complete Sequence
1382 bp assembled on 2011-02-18
GenBank Submission: KX800371
> BS23577.complete
GAAGTTATCAGTCGACATGAGACGTTTTCGGCCCATGAATCGTTCTTGGA
ATGCTCTGCGTTCGCGTTCACGTTCACGTTCACGTTCGCGTTCGCCTTTC
CGTTCGCAATCCATTACTCGATCCCGGCCCACCCGTTCGGATACCATTTA
CACAGAGAGGACGCGATTGCAGCGACGTTTCAGTCGGCCTCCCTCCTCCT
GGGACATTCCACCAGAGGGTTATAACCACCTGACTCCGCAACAGTACAAG
GCCATGCTGGCCAGCGGCCAGATTGCCTCGAGGATTCTTTCCGATGGCGT
ACACGGGGGCGAGTCCGCCGCGATTTCGATGATCACTCGACAAGCTCGCC
GCCTGTATGTGGGTAATATTCCATTCGGAGTTACGGATGAGGAGATGATG
CAGTTCTTCAATCATCAGATCATGGCTCTGGGATTTGAAGCAAAAAGCTC
GCACTACATGGATGGCAATGCTGTGCTGACCTGCCAAACGAATCTGGAGA
AGAACTTTGCCTTTCTGGAATTCCGATCCATTGACGAGGCCAGCCAGGCC
TTGAATTTCGATGGGATGGTCTTCCGTGGACAAACCTTGAAGATAAGACG
GCCACACGACTATCAGCCAGTGCCCTCGATTTCAGTCTCTGCAATGGAGA
GCTACAGGTCATTCAGGGTCCCTGCCATCAATGTAGCCCAACAACCGGCT
GTTACCCTTCCTGTGACCACTATTGTCCCCGATTCCCCCAATAAGATCTA
CGTAGGTGGCTTGCCCACCTGCCTGAATCAGGATCAGGTCAAGGAACTGC
TGCAGTCGTTTGGAGAACTGAAAGGACTGAATCTGGTGATGGATACCAAC
ACGAACCTGAACAAGGGTTTCGCCTTCTTTGAGTACTGCGATCCCTCGGT
TACCGATCACGCCATAGCTGGATTGCACGGCATGCTGCTGGGGGATCGCA
GGCTGGTGGTCCAGAGATCTATTCCAGGCGGAAAGAACGCATTCCCCGGC
CACTTACCAACCGTTCTTCAGGTACCGGGCATATCCACACTACAAGATCC
TGGCTCACCTACCGAAACTCTCTGCCTGCTGAACATGGTGCGGCCGGAGG
AGCTGCTGGACGACGAGGAGTTCGAGGACATTCGCACGGACATCAAGCAG
GAGTGCGCCAAGTTCGGCGAGGTTCGCAGCATCAAGATTCCGCGTCCCAT
CGGTCAATTTCCGAAGCGGGGCTGTGGCAAGGTCTTCGTCCAGTTCGAAT
CCGTGGAGGATTCGCAGAAGGCCCTTAAGGCATTGAGTGGTCGCAAGTTC
AGCGGGCGCATAGTGATGACCTCGTATTACGATCCCGAAAAGTACCTGGC
GGATGATCTACAATAAAAGCTTTCTAGACCAT
BS23577.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:29:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| LS2-RA | 1350 | CG3162-PA | 1..1350 | 17..1366 | 6735 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:29:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| LS2-RA | 1410 | CG3162-RA | 42..1392 | 17..1367 | 6740 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:29:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23210148..23211498 | 1367..17 | 6740 | 99.9 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:29:33 has no hits.
BS23577.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-18 10:40:48 Download gff for
BS23577.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3162-RA | 42..1389 | 17..1364 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:53:45 Download gff for
BS23577.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LS2-RA | 42..1389 | 17..1364 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:14:10 Download gff for
BS23577.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LS2-RA | 42..1389 | 17..1364 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:14:10 Download gff for
BS23577.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23210151..23211498 | 17..1364 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:53:45 Download gff for
BS23577.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19097674..19099021 | 17..1364 | 99 | | Minus |
BS23577.pep Sequence
Translation from 16 to 1365
> BS23577.pep
MRRFRPMNRSWNALRSRSRSRSRSRSPFRSQSITRSRPTRSDTIYTERTR
LQRRFSRPPSSWDIPPEGYNHLTPQQYKAMLASGQIASRILSDGVHGGES
AAISMITRQARRLYVGNIPFGVTDEEMMQFFNHQIMALGFEAKSSHYMDG
NAVLTCQTNLEKNFAFLEFRSIDEASQALNFDGMVFRGQTLKIRRPHDYQ
PVPSISVSAMESYRSFRVPAINVAQQPAVTLPVTTIVPDSPNKIYVGGLP
TCLNQDQVKELLQSFGELKGLNLVMDTNTNLNKGFAFFEYCDPSVTDHAI
AGLHGMLLGDRRLVVQRSIPGGKNAFPGHLPTVLQVPGISTLQDPGSPTE
TLCLLNMVRPEELLDDEEFEDIRTDIKQECAKFGEVRSIKIPRPIGQFPK
RGCGKVFVQFESVEDSQKALKALSGRKFSGRIVMTSYYDPEKYLADDLQ*
BS23577.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:23:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| LS2-PA | 449 | CG3162-PA | 1..449 | 1..449 | 2332 | 100 | Plus |
| U2af50-PB | 427 | CG9998-PB | 14..422 | 12..443 | 1130 | 54.9 | Plus |
| U2af50-PD | 416 | CG9998-PD | 6..411 | 15..443 | 1129 | 55.1 | Plus |
| U2af50-PA | 416 | CG9998-PA | 6..411 | 15..443 | 1129 | 55.1 | Plus |
| U2af50-PC | 360 | CG9998-PC | 2..355 | 76..443 | 1036 | 57.6 | Plus |
