Clone BS23578 Report

Search the DGRC for BS23578

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:235
Well:78
Vector:pDNR-Dual
Associated Gene/TranscriptCG5614-RA
Protein status:BS23578.pep: full length peptide match
Sequenced Size:1109

Clone Sequence Records

BS23578.complete Sequence

1109 bp assembled on 2011-02-07

GenBank Submission: KX801669

> BS23578.complete
GAAGTTATCAGTCGACATGAGTTCGCATAAGATTAACCTGGAGAATGCCT
ACCAGAAGATGATAGAACAGAATATCAAAAGTCAGTTGGAGAAAAATGGA
ACCATGGCGGCACTACGGAGCGAAATGCACGTGAAGATCCTCCAGATGAT
ACGTGGCCAGCAGAATAAGTCCAAAGTCCAAGCACTCACTGGTGGATCCA
ATCAATCGGAGGATCACAGCCTGGTCAAGCTGATCAACCAGATGATTATG
GAGTTCCTCGATTGGTTCGGCTACAAGCACACCATGGAAACATTTCGCAT
GGAGACGGGTGAAAACGTGGCCAATCGCAGGGAGATGGAACAAAGTCTAC
ACATCACACCCGAGTCAAAGGATTTTCCGCTCCTGGCTCAACTAGTTATG
CGCGATTGGAAGTTCGGTGTGCAAAAAGGAGGTTCCAAAAAGTTGGTTCA
GCTACCGGATCCTATGGAGGCCACTGTGCAAAGGAGTCGAAAATTGGTAC
AGGAACTAAAAGTTATGAGAGCACAAAAATCAGAAGTTAACCAAGGCAGA
CTAGTTCAAAACAATCGAAAACTCATCACTAATAATACGTTCACGAAAGG
TCTCACACCCAAGAGCATTAGTACTCCACCTCGTTCGATCAAGAACGAGA
ATCCGAAGTCATACGTAGATAGTTCTGAATCCGATGTCCTGGAATCTGAT
TACAGCGAAGAAGAATCGGAGGACAGTGACGCATATAAGGACATACCCGA
TAGACAGATATTTATCGATGACTTGCCGCCAGAGGGAAAATATGCCCCAA
ATTATGGAGAAGAAGGTCCTTTTGAGGGTAAACAAAATCAGGCAAATGAA
CGCGACAATATTCCGAGCACATCGAGGAAGCAACATTTTTCAAGGAAGCC
AGAAACTGAAAGTTCCGACTCTGATGATAAGCCTTCGATCAGTGGAATAA
ATAAAGTTTCAAGGCAGGACTATTGGAATTCCCCGCGAGGAGTGCAACTA
CGGAACAAAAATACCTTAAAACCGGAGGAAGAATGTGATACCCACATAAG
AAAAGTCAATTTAGACAGCGATTACAGCTCGGATGAAGATTGAAAGCTTT
CTAGACCAT

BS23578.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:20:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG5614-RA 1077 CG5614-PA 1..1077 17..1093 5355 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:20:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG5614-RA 1288 CG5614-RA 105..1182 16..1093 5360 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:20:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15779909..15780986 16..1093 5360 99.8 Plus
Blast to na_te.dros performed on 2014-11-27 01:20:46 has no hits.

BS23578.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-14 14:32:57 Download gff for BS23578.complete
Subject Subject Range Query Range Percent Splice Strand
CG5614-RA 106..1181 17..1092 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:51:34 Download gff for BS23578.complete
Subject Subject Range Query Range Percent Splice Strand
CG5614-RA 106..1181 17..1092 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:23:38 Download gff for BS23578.complete
Subject Subject Range Query Range Percent Splice Strand
CG5614-RA 106..1181 17..1092 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:23:38 Download gff for BS23578.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15779910..15780985 17..1092 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:51:34 Download gff for BS23578.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11605632..11606707 17..1092 99   Plus

BS23578.pep Sequence

Translation from 16 to 1092

> BS23578.pep
MSSHKINLENAYQKMIEQNIKSQLEKNGTMAALRSEMHVKILQMIRGQQN
KSKVQALTGGSNQSEDHSLVKLINQMIMEFLDWFGYKHTMETFRMETGEN
VANRREMEQSLHITPESKDFPLLAQLVMRDWKFGVQKGGSKKLVQLPDPM
EATVQRSRKLVQELKVMRAQKSEVNQGRLVQNNRKLITNNTFTKGLTPKS
ISTPPRSIKNENPKSYVDSSESDVLESDYSEEESEDSDAYKDIPDRQIFI
DDLPPEGKYAPNYGEEGPFEGKQNQANERDNIPSTSRKQHFSRKPETESS
DSDDKPSISGINKVSRQDYWNSPRGVQLRNKNTLKPEEECDTHIRKVNLD
SDYSSDED*

BS23578.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:08:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG5614-PA 358 CG5614-PA 1..358 1..358 1855 100 Plus