BS23580.complete Sequence
1214 bp assembled on 2011-03-18
GenBank Submission: KX804897
> BS23580.complete
GAAGTTATCAGTCGACATGAACTACAATCCAAATCCGGCCTCAGCTGCCG
GTCGCCCAAGGCCGCCGAAGCGTGTGAGTGATGTTAACGCCATGGGACCC
TCGGCTCCGATGATGGGCGGTGGCGCCACCTTCATGGCCCCGCCCACCGG
CCCCGGAATACTAGATCCCAATATGTACGGAGCACCTGCTCCGGCCCCGG
TCAACAGCTATGGCTTCGACCCCAATCTCGGCCAGCCCTCGCAGCACATT
CAGCAGCCACCACAACAGCAGCCCGGATACGGATATGGAGCACCACCTCC
CCAACAGGCGGCTGGGCCACCCACCTACGGAATAGGAGCACCTCAGCCTG
TAGCTCCACCCACTGGACAGTACCCACAGTTCGCCATGTTCCAGCAGCCC
ATCGTGCAAGACATGGCTATGCAGTACGGTCAGAAACTAGCGGATCAGGG
CAAGCAGATCATGGAGAATCAGTTCGAGAAGTGGGTGCCCGTAGCCAAGC
TCAAGTACTACTTCGCAGTGGACAACGCCTACGTGGGCAGGAAGTTGCGC
CTTCTGTTTTTCCCCTATATGCATAAGGATTGGTCCCTGCGCTACGACCA
AGAGCACCCAGTGCAACCACGATATGATGTTAATGCGCCAGATCTCTATC
TGCCCACCATGGGCTACATCACATACGTGATCGTAGCGGGTTTGCTTCTG
GGCATGCAGAAGCGATTTTCGCCGGAGCAGCTCGGCATTCAGGCCTCCAG
CGCCATGGCATATAGCATTTTCGAATTGGTCATTTACTCCCTAGCCCTGT
ACGTAATGAATGTGAAGACGAGCCTGAAAACGCTTGATCTGCTGGCATTC
ACTGGTTATAAGTACGTTAATATAGTTGTCTGCCTGATGGTTAGCACGCT
GTTCTTTAAGTCTGGATATTATATAGCACTGGCGTATACCAGTTTCTCCT
TCGGTTTCTTCATGCTCCGCACGTTGCGGACGAAACTGCTGCAGGACAAC
TCCCCGGCTGCGCCCAGTGGAGCCATCAACTACGATCCGTATGGCAATCC
ACAGCAATTTGACTACAGCGGCGGGAAAAAGCGCAAACTCTACTTCCTGT
TCATGATCGTCGCGGGACAGGCGCTGTTCGCCTTCCTGCTCTCCAAGCAC
CTGTATCTGCCCGAGGCGGAGGTGCTGACGGTGCCCAAGACCTTCTAAAA
GCTTTCTAGACCAT
BS23580.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:35:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5484-RB | 1182 | CG5484-PB | 1..1182 | 17..1198 | 5910 | 100 | Plus |
| CG5484-RC | 1209 | CG5484-PC | 50..1209 | 39..1198 | 5800 | 100 | Plus |
| CG5484-RA | 1194 | CG5484-PA | 35..1194 | 39..1198 | 5800 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:35:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5484-RB | 1495 | CG5484-RB | 108..1289 | 17..1198 | 5910 | 100 | Plus |
| CG5484-RC | 1522 | CG5484-RC | 157..1316 | 39..1198 | 5800 | 100 | Plus |
| CG5484-RA | 1507 | CG5484-RA | 142..1301 | 39..1198 | 5800 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:35:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26718327..26718867 | 38..578 | 2705 | 100 | Plus |
| 3R | 32079331 | 3R | 26718920..26719308 | 576..964 | 1945 | 100 | Plus |
| 3R | 32079331 | 3R | 26719366..26719600 | 964..1198 | 1175 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:35:14 has no hits.
BS23580.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-18 12:09:28 Download gff for
BS23580.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5484-RB | 131..1310 | 17..1196 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:38:00 Download gff for
BS23580.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5484-RB | 108..1287 | 17..1196 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:56:09 Download gff for
BS23580.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5484-RB | 108..1287 | 17..1196 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:56:09 Download gff for
BS23580.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26717978..26717999 | 17..38 | 100 | -> | Plus |
| 3R | 26718328..26718866 | 39..577 | 100 | -> | Plus |
| 3R | 26718922..26719308 | 578..964 | 100 | -> | Plus |
| 3R | 26719367..26719598 | 965..1196 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:38:00 Download gff for
BS23580.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22543700..22543721 | 17..38 | 100 | -> | Plus |
| arm_3R | 22544050..22544588 | 39..577 | 100 | -> | Plus |
| arm_3R | 22544644..22545030 | 578..964 | 100 | -> | Plus |
| arm_3R | 22545089..22545320 | 965..1196 | 100 | | Plus |
BS23580.pep Sequence
Translation from 16 to 1197
> BS23580.pep
MNYNPNPASAAGRPRPPKRVSDVNAMGPSAPMMGGGATFMAPPTGPGILD
PNMYGAPAPAPVNSYGFDPNLGQPSQHIQQPPQQQPGYGYGAPPPQQAAG
PPTYGIGAPQPVAPPTGQYPQFAMFQQPIVQDMAMQYGQKLADQGKQIME
NQFEKWVPVAKLKYYFAVDNAYVGRKLRLLFFPYMHKDWSLRYDQEHPVQ
PRYDVNAPDLYLPTMGYITYVIVAGLLLGMQKRFSPEQLGIQASSAMAYS
IFELVIYSLALYVMNVKTSLKTLDLLAFTGYKYVNIVVCLMVSTLFFKSG
YYIALAYTSFSFGFFMLRTLRTKLLQDNSPAAPSGAINYDPYGNPQQFDY
SGGKKRKLYFLFMIVAGQALFAFLLSKHLYLPEAEVLTVPKTF*
BS23580.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:07:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5484-PB | 393 | CG5484-PB | 1..393 | 1..393 | 2093 | 100 | Plus |
| CG5484-PA | 397 | CG5484-PA | 1..397 | 1..393 | 2074 | 98.7 | Plus |
| CG5484-PC | 402 | CG5484-PC | 1..402 | 1..393 | 2070 | 97.5 | Plus |
