BS23585.complete Sequence
1109 bp assembled on 2011-02-07
GenBank Submission: KX805127
> BS23585.complete
GAAGTTATCAGTCGACATGGACAAGATAATGATTTGCATCATTGGGTCGG
GAAACTGGGCCACTACCATAGCCCGCAATGTGGGCAGAAACGTCCTGAAT
TCGCAGACACTGGACGAAAAGGTGCCCATGTACGTTTATGAGGAAATTGT
TGAAGGTCGCAAGCTCACGGAAATCATCAACACCACCCACATAAATTCCA
AGTACATGCCGAACTTTGAACTGCCGCCAAATATTGTGGCCGTGGATGAT
ATCGTGACTACGGCTCGAGATGCGGACATTATAATATTCGCCATTCCGCC
GACTTTCGTGAGTAGCTGCTGCAAGACGCTGCTCGGAAAAGTCAAGCCCA
CGGCCCACGCCGTTTCCCTGATCAAAGGATTCGAGCGCGGCGACGATGGC
CAGTTCGTCCTGATTTCGCAGATTATAATGCGGCAGCTAAAGATTCCCTG
CTCCGTCCTGGTCGGCTGTAACTTGGCCCATGAGCTGGCCCACGACCACT
TTGCCGAGGGCACAGTTGGCTGTCGGGATCAGAAGTATTACAGGGTGCTC
CACGACATATTCAAGTCGCCCACTTTCCGCGTGGTGGTCACCGAGGATGC
CGACTGTGTGGAGATCTGTTCCACTCTAAGGAACATCATTGCCTTTGCGG
CTGGCTGTTCCGACGGGATGGAGCTGAATGAGAACACCAAGGGAGGCATC
ATCAGGAGAGGATTTCTGGAGATGCTTCAGTTCGTCGATGTGTTCTATCC
CGGCTGCCGCATGGGAACCTTTTTTGAGTCGTGCGGAATATCCGATTTGG
TTACTAGTTGTTATGCAAACCGCAATCGCAAGTTGGCCGAAGCTTTTGTG
AAGACGGGCAAACCCTTGAGCGAACTGGAGCACATTCTCATTCCAGGACA
CGAGCCACTGGGTCCGGTGACAGCGGAGCTGGTGCATCATATGCTCAAGA
AGAAGGGCTTGGAGGACAAATTCCCCCTCTTTACAACTGTGTACAGAATC
TGCACTGGAGACTATCCACTGCAGCGTCTGGTCGAAACTCTGATTAAGGC
ACGCGAGGATATATTTCACCCGCTCCATACTTTCCAATTGTGAAAGCTTT
CTAGACCAT
BS23585.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:21:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3215-RA | 1077 | CG3215-PA | 1..1077 | 17..1093 | 5265 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:21:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3215-RA | 1209 | CG3215-RA | 73..1150 | 17..1094 | 5270 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:21:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23129895..23130117 | 239..17 | 1055 | 98.2 | Minus |
| 2R | 25286936 | 2R | 23129627..23129833 | 442..236 | 1020 | 99.5 | Minus |
| 2R | 25286936 | 2R | 23129357..23129547 | 631..441 | 955 | 100 | Minus |
| 2R | 25286936 | 2R | 23129114..23129298 | 815..631 | 895 | 98.9 | Minus |
| 2R | 25286936 | 2R | 23128906..23129060 | 969..815 | 775 | 100 | Minus |
| 2R | 25286936 | 2R | 23128752..23128848 | 1062..966 | 455 | 97.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:21:29 has no hits.
BS23585.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-14 14:32:58 Download gff for
BS23585.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3215-RA | 73..1148 | 17..1092 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:51:53 Download gff for
BS23585.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3215-RA | 73..1148 | 17..1092 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:23:48 Download gff for
BS23585.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3215-RA | 73..1148 | 17..1092 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:23:48 Download gff for
BS23585.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23128665..23128694 | 1063..1092 | 100 | <- | Minus |
| 2R | 23128752..23128844 | 970..1062 | 98 | <- | Minus |
| 2R | 23128906..23129059 | 816..969 | 100 | <- | Minus |
| 2R | 23129114..23129297 | 632..815 | 98 | <- | Minus |
| 2R | 23129357..23129545 | 443..631 | 100 | <- | Minus |
| 2R | 23129627..23129833 | 236..442 | 99 | <- | Minus |
| 2R | 23129899..23130117 | 17..235 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:51:53 Download gff for
BS23585.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19016188..19016217 | 1063..1092 | 100 | <- | Minus |
| arm_2R | 19016275..19016367 | 970..1062 | 98 | <- | Minus |
| arm_2R | 19016429..19016582 | 816..969 | 100 | <- | Minus |
| arm_2R | 19016637..19016820 | 632..815 | 98 | <- | Minus |
| arm_2R | 19016880..19017068 | 443..631 | 100 | <- | Minus |
| arm_2R | 19017150..19017356 | 236..442 | 99 | <- | Minus |
| arm_2R | 19017422..19017640 | 17..235 | 98 | | Minus |
BS23585.pep Sequence
Translation from 16 to 1092
> BS23585.pep
MDKIMICIIGSGNWATTIARNVGRNVLNSQTLDEKVPMYVYEEIVEGRKL
TEIINTTHINSKYMPNFELPPNIVAVDDIVTTARDADIIIFAIPPTFVSS
CCKTLLGKVKPTAHAVSLIKGFERGDDGQFVLISQIIMRQLKIPCSVLVG
CNLAHELAHDHFAEGTVGCRDQKYYRVLHDIFKSPTFRVVVTEDADCVEI
CSTLRNIIAFAAGCSDGMELNENTKGGIIRRGFLEMLQFVDVFYPGCRMG
TFFESCGISDLVTSCYANRNRKLAEAFVKTGKPLSELEHILIPGHEPLGP
VTAELVHHMLKKKGLEDKFPLFTTVYRICTGDYPLQRLVETLIKAREDIF
HPLHTFQL*
BS23585.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:08:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3215-PA | 358 | CG3215-PA | 1..358 | 1..358 | 1885 | 100 | Plus |
| Gpdh-PE | 350 | CG9042-PE | 3..343 | 2..342 | 1025 | 54 | Plus |
| Gpdh-PA | 350 | CG9042-PA | 3..343 | 2..342 | 1025 | 54 | Plus |
| Gpdh-PG | 353 | CG9042-PG | 3..343 | 2..342 | 1025 | 54 | Plus |
| Gpdh-PC | 353 | CG9042-PC | 3..343 | 2..342 | 1025 | 54 | Plus |
