BS23588.complete Sequence
944 bp assembled on 2011-02-07
GenBank Submission: KX801630
> BS23588.complete
GAAGTTATCAGTCGACATGCTGTTCTCAAAGACGAATACCTCTTGTGCAA
GTCGTATCCAGTTTTTGGATAATGTAGAACACCGCTGCCAGTCAATGCTG
AAGCTTAACGACCACAAGATGAACATGGAGTTGCCCAATGAAGTTCGGCC
GCAGATCGTCGGTATGGCCGGTGGGTACTCAAGAGAGAGTGGGAGTTCGG
TGACAAGTAGCAGTGGGCTGTCTAGTAAGAGAAGCTGCTTTATATCAACC
TGCTATCCTAAAGCTGAACGCAAGGCCTGTGTATCCGCTGACACATGTCA
TGTTAAATGCTGCGATGGGGAAGATAATCGTCCACCGTACGCTAGGATAA
TGCCCGAAGATCGCCGATTTGGTGTAGTTATCACCAATGAGGAGTGTCCC
TGCGACTGTGACTTCAATTGCATTTTAGAGTTCATGGCAGAGGCATTCCA
TACTGCGCAGGACGTCGCCTCCCTGAGCTTTAGTCAGTGTACTCCGGTAG
CTGAATTCGACTGCTCTTTGCTGCTCGTTGCCGAGGACAGTGACTCCAGT
GATTGGCTTCTCCGGGTAGCCCGACCCATGTGTCCACCATACAGATGCAC
GTCATTCATCAAACACTTTGATCTGGTGCGGTCCATATTTGTTATTCCAA
TGATCGTGGAACGAAGGCTCTGCAATGTCTTTCAAATATTTGAAAACCAA
AACTGCGGCATTGACACCGGAAAATGGTGCGTGATGGAAATGGCTCCTTT
GGATCCTTGCTCAGATTCATATGCATCGAAGGTAATCTTCCCGGATTCCA
CCAACTATGAGATCGTGGCTTACATCGACAACGAATCCAAGGAATACATT
GAGAATCACTGCAGCAAGATAAAGTATATAACGTGGCACCTGCCTGTGGA
TTTCCCCCAAGGCTTGTCTTGTACATAAAAGCTTTCTAGACCAT
BS23588.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:14:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31948-RA | 912 | CG31948-PA | 1..912 | 17..928 | 4545 | 99.9 | Plus |
| CG31948-RB | 1119 | CG31948-PB | 241..1119 | 50..928 | 4380 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:14:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31948-RA | 1167 | CG31948-RA | 187..1098 | 17..928 | 4545 | 99.9 | Plus |
| CG31948-RB | 1362 | CG31948-RB | 340..1218 | 50..928 | 4380 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:13:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2415503..2416381 | 928..50 | 4380 | 99.9 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:13:59 has no hits.
BS23588.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-07 11:33:48 Download gff for
BS23588.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31948-RA | 187..1096 | 17..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:51:17 Download gff for
BS23588.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31948-RA | 187..1096 | 17..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:55:02 Download gff for
BS23588.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31948-RA | 187..1096 | 17..926 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:55:02 Download gff for
BS23588.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2415505..2416379 | 52..926 | 99 | <- | Minus |
| 2L | 2416436..2416470 | 17..51 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:51:17 Download gff for
BS23588.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2415505..2416379 | 52..926 | 99 | <- | Minus |
| arm_2L | 2416436..2416470 | 17..51 | 100 | | Minus |
BS23588.pep Sequence
Translation from 16 to 927
> BS23588.pep
MLFSKTNTSCASRIQFLDNVEHRCQSMLKLNDHKMNMELPNEVRPQIVGM
AGGYSRESGSSVTSSSGLSSKRSCFISTCYPKAERKACVSADTCHVKCCD
GEDNRPPYARIMPEDRRFGVVITNEECPCDCDFNCILEFMAEAFHTAQDV
ASLSFSQCTPVAEFDCSLLLVAEDSDSSDWLLRVARPMCPPYRCTSFIKH
FDLVRSIFVIPMIVERRLCNVFQIFENQNCGIDTGKWCVMEMAPLDPCSD
SYASKVIFPDSTNYEIVAYIDNESKEYIENHCSKIKYITWHLPVDFPQGL
SCT*
BS23588.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:01:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31948-PA | 303 | CG31948-PA | 1..303 | 1..303 | 1650 | 100 | Plus |
| CG31948-PB | 372 | CG31948-PB | 71..372 | 2..303 | 1603 | 97.7 | Plus |
| CG7208-PB | 447 | CG7208-PB | 223..446 | 69..296 | 419 | 37.2 | Plus |
| CG7208-PA | 450 | CG7208-PA | 226..449 | 69..296 | 419 | 37.2 | Plus |
