BS23603.complete Sequence
1334 bp assembled on 2011-02-07
GenBank Submission: KX801218
> BS23603.complete
GAAGTTATCAGTCGACATGTCACAGCGAAATCACAGAGTGGACCGCTTCG
CCCAGATGACAAAGCAGGAGGAGATCATAGCCAAGAAACGGCAAGAGATC
CTCGAGAAGCAGAAGACGGCACAGCTGGCGAAGGCGGTGGCCGCGGCGCA
GAACTTGGCAGCGCAGCTGAAAACCGAGACGACTGTGGGAAAACCCATTG
GCAACGAGGTGGAGTATGAGGAGGATGCCCGATACCTGGACACCGCCGTC
CAGGACACCTCTCTAGCGGCCGGCGAGGATGGCCTGGAGGCTGTTCACAT
TGAGGCCACGGCCAGCAAGGGAAAGACGGAGGACGCGGTGGCCCCCAAGA
CGCTGAATAGCTTCACTGGCAAAACGGGCAAGATCACATTTGGCATGAAG
CGTCAGCAGCTGCCTCAGCCCAGTGTTGAGCAGCCACCACCGAAGGTTAA
AAACACTTTCTGCAACGATGGTTCCTTTTTAGAGAACTTCAAGAAAATAC
TCGAAAAGCACGAAAAGCCTCCGCAGCCCTTGATTGTTCCGCCGGTTCCA
GTGCCCAGCGCCGAGGAGAACAAAGCCGTGGACACGGAAACAGCAGAGCA
GAACAACAGTCCCCAGCTAGAGGCGGCCATCGCCATAAGCTCGGCAGCAG
CCATGGCTACCTCCATTACGGTGACCAGCTCGGCGCCAACTCATTTGGCT
TTTGGACTACCCGTGCAAGCAGTGCAGCCACCACCGCCGCCTCCATTTGC
ATTCAATCCTACGCTTTTGCAACAGGGACCACCGCAGATGCAGCTGCCAG
CTGCATTCTTTCACGGCCATTTGCCTCTGCACTTGCATCCGGCGGCAGTT
GCTCCTCCGCCACCTCCACCGCCTCCACAGCTGCCCATCGCTCTGACCAA
CATGGGACAGATTTACATGCAGCTTGGTCCGTCTCCAGTGGAGGCTATGC
AGCTGAATGCCATACCGGCGCCCAAAGAGTTTGACTTAAATGCCATACCT
AAGCCACAAATAAATCTGGAGGCTATCCAGATGCCCAGCATCGGTGGTCA
TTCGACGGAGCAGCTTGGCCTCCTGCCGGACCGCATGTCCATGCCAGTGA
ATCCACACCCACCGCCTCCGCCGCCACCTGTAGTGGAGGAAATGGAGCAA
CAGCGCCAGCAGGTGGCACCTCCACATCCACCTCAGCCCACAGCTGCGCC
GCCACAAGGTTTCTTTATGATAAGAGCTGCGAGCAGTATCGAAGCTATAG
CGACCAACTCCTCGACTACAAACAGCAGCGGGCTGAGCGACAACGGGAGC
GGGAGCATCAGAAGCTAAAAGCTTTCTAGACCAT
BS23603.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:21:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31550-RC | 1302 | CG31550-PC | 1..1302 | 17..1318 | 6495 | 99.9 | Plus |
| CG31550-RD | 2508 | CG31550-PD | 1..1196 | 17..1212 | 5950 | 99.8 | Plus |
| CG31550-RB | 2499 | CG31550-PB | 1..1192 | 17..1208 | 5945 | 99.9 | Plus |
| CG31550-RD | 2508 | CG31550-PD | 1319..1429 | 1208..1318 | 555 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:21:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31550-RC | 2573 | CG31550-RC | 97..1398 | 17..1318 | 6495 | 99.9 | Plus |
| CG31550-RD | 2700 | CG31550-RD | 97..1292 | 17..1212 | 5950 | 99.8 | Plus |
| CG31550-RB | 2691 | CG31550-RB | 97..1288 | 17..1208 | 5945 | 99.9 | Plus |
| CG31550-RD | 2700 | CG31550-RD | 1415..1525 | 1208..1318 | 555 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:21:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5486233..5486886 | 557..1210 | 3255 | 99.8 | Plus |
| 3R | 32079331 | 3R | 5485639..5486180 | 17..558 | 2710 | 100 | Plus |
| 3R | 32079331 | 3R | 5487833..5487944 | 1207..1318 | 560 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:21:02 has no hits.
BS23603.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-07 14:43:02 Download gff for
BS23603.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31550-RC | 108..1407 | 17..1316 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:55:04 Download gff for
BS23603.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31550-RC | 97..1396 | 17..1316 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:58:22 Download gff for
BS23603.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31550-RC | 97..1396 | 17..1316 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:58:22 Download gff for
BS23603.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5485639..5486180 | 17..558 | 100 | -> | Plus |
| 3R | 5486235..5486884 | 559..1208 | 99 | -> | Plus |
| 3R | 5487835..5487942 | 1209..1316 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:55:04 Download gff for
BS23603.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1311361..1311902 | 17..558 | 100 | -> | Plus |
| arm_3R | 1311957..1312606 | 559..1208 | 99 | -> | Plus |
| arm_3R | 1313557..1313664 | 1209..1316 | 100 | | Plus |
BS23603.pep Sequence
Translation from 16 to 1317
> BS23603.pep
MSQRNHRVDRFAQMTKQEEIIAKKRQEILEKQKTAQLAKAVAAAQNLAAQ
LKTETTVGKPIGNEVEYEEDARYLDTAVQDTSLAAGEDGLEAVHIEATAS
KGKTEDAVAPKTLNSFTGKTGKITFGMKRQQLPQPSVEQPPPKVKNTFCN
DGSFLENFKKILEKHEKPPQPLIVPPVPVPSAEENKAVDTETAEQNNSPQ
LEAAIAISSAAAMATSITVTSSAPTHLAFGLPVQAVQPPPPPPFAFNPTL
LQQGPPQMQLPAAFFHGHLPLHLHPAAVAPPPPPPPPQLPIALTNMGQIY
MQLGPSPVEAMQLNAIPAPKEFDLNAIPKPQINLEAIQMPSIGGHSTEQL
GLLPDRMSMPVNPHPPPPPPPVVEEMEQQRQQVAPPHPPQPTAAPPQGFF
MIRAASSIEAIATNSSTTNSSGLSDNGSGSIRS*
BS23603.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:04:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31550-PC | 433 | CG31550-PC | 1..433 | 1..433 | 2244 | 100 | Plus |
| CG31550-PD | 835 | CG31550-PD | 1..399 | 1..399 | 2076 | 99.7 | Plus |
| CG31550-PB | 832 | CG31550-PB | 1..397 | 1..397 | 2073 | 100 | Plus |
| dalao-PA | 749 | CG7055-PA | 317..679 | 19..396 | 166 | 25.7 | Plus |
