BS23606.complete Sequence
1016 bp assembled on 2011-02-07
GenBank Submission: KX802930
> BS23606.complete
GAAGTTATCAGTCGACATGGGGAATGGCATGAACAAGGTCTTGCCGGGAC
TTTATGTGGGCAACTATCGCGACTCCAAGGATCACGCTCAGCTGGAAAGA
TTCAAGATCTCGCACATCATCGCCATACATGACAGTCCGCGGCGTTTGCT
GCCGGACAAGCACTACCTGTGCGTGATGGCCTCGGATACGCCAGACCAGA
ATCTCTCCCAATACTTTTCCGTCTGCAACGACTTCATACACGCCGCCCGG
CTTCGCGAAGGCAACGTACTCATCCACTGCCTGGCGGGGATGTCGCGCTC
GGTGACCGTGGCCGTGGCCTATATCATGACGGCCACACACCTGAACTGGA
AGGAGGCACTTAAGGTGGTTCGAGCTGGTCGCGCTGTAGCCAATCCAAAT
GCTGGATTCCAGAGCCAACTGCAGGAGTTTGAGCAGTTTAAGCTGTCCGA
GGAACGCCGCCGCTTGAGGGAACGCTTCCCATCCTCGGCTCTGGAGCAAC
TGGATCGCACTAAGGTGGCCACCGCGCTGGACAACTACCAGGAGTTGCTG
CAGAACCGCGACATCTGCGAGGGTAACTGCTCCCGCGGCGAAAAATGTCC
TACAGGTGCGGACCAAGACGTAGATGGTGTTAATATTGGTCAGGGGGAGG
AAGAAGACGAGGGTGAAGGCGAGGGCTTGGGCAAAGTCAGGCGAAGCTTG
GCTTACACTCTAAACTTTGCGGTGGACCAATGGAAGAGCAGTACCATTAA
AAAGGATCCGAACAATGACCCCCCACCGGATTTTAGCTTGGGCAAGGACC
TTATGCCAAGTGTGCGTTACTACGATCCGGAGTGCGACAAGGGTCAATTT
GTTAAGAATGTGGATTCGGACAATGATGAAGAACAGTATATTGCTTTCAA
GACCTCAACGAAGCTAGAAGCCAAGTCCACGTCAAAATTAAAAAAACGAC
GTGTACCAAAATCGGAATCCTGCAACCAAAGCTGTCTTGAGAAGCCATAG
AAGCTTTCTAGACCAT
BS23606.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:17:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10089-RA | 984 | CG10089-PA | 1..984 | 17..1000 | 4920 | 100 | Plus |
| CG10089-RB | 984 | CG10089-PB | 1..984 | 17..1000 | 4920 | 100 | Plus |
| CG10089-RC | 984 | CG10089-PC | 19..984 | 35..1000 | 4830 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:17:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10089-RA | 1569 | CG10089-RA | 555..1540 | 15..1000 | 4930 | 100 | Plus |
| CG10089-RB | 1518 | CG10089-RB | 504..1489 | 15..1000 | 4930 | 100 | Plus |
| CG10089-RC | 1070 | CG10089-RC | 76..1041 | 35..1000 | 4830 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:17:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13468049..13468895 | 1000..154 | 4235 | 100 | Minus |
| 3L | 28110227 | 3L | 13468952..13469072 | 155..35 | 605 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:17:12 has no hits.
BS23606.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-07 12:10:20 Download gff for
BS23606.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10089-RA | 313..1296 | 17..1000 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:53:04 Download gff for
BS23606.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10089-RB | 262..1245 | 17..1000 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:56:33 Download gff for
BS23606.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10089-RB | 506..1489 | 17..1000 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:56:33 Download gff for
BS23606.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13468049..13468894 | 155..1000 | 100 | <- | Minus |
| 3L | 13468953..13469069 | 38..154 | 100 | <- | Minus |
| 3L | 13469777..13469797 | 17..37 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:53:04 Download gff for
BS23606.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13461149..13461994 | 155..1000 | 100 | <- | Minus |
| arm_3L | 13462053..13462169 | 38..154 | 100 | <- | Minus |
| arm_3L | 13462877..13462897 | 17..37 | 100 | | Minus |
BS23606.pep Sequence
Translation from 16 to 999
> BS23606.pep
MGNGMNKVLPGLYVGNYRDSKDHAQLERFKISHIIAIHDSPRRLLPDKHY
LCVMASDTPDQNLSQYFSVCNDFIHAARLREGNVLIHCLAGMSRSVTVAV
AYIMTATHLNWKEALKVVRAGRAVANPNAGFQSQLQEFEQFKLSEERRRL
RERFPSSALEQLDRTKVATALDNYQELLQNRDICEGNCSRGEKCPTGADQ
DVDGVNIGQGEEEDEGEGEGLGKVRRSLAYTLNFAVDQWKSSTIKKDPNN
DPPPDFSLGKDLMPSVRYYDPECDKGQFVKNVDSDNDEEQYIAFKTSTKL
EAKSTSKLKKRRVPKSESCNQSCLEKP*
BS23606.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:01:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10089-PA | 327 | CG10089-PA | 1..327 | 1..327 | 1722 | 100 | Plus |
| CG10089-PB | 327 | CG10089-PB | 1..327 | 1..327 | 1722 | 100 | Plus |
| CG10089-PC | 327 | CG10089-PC | 5..327 | 5..327 | 1693 | 99.7 | Plus |
| CG10089-PF | 447 | CG10089-PF | 1..197 | 1..197 | 1032 | 100 | Plus |
| CG10089-PD | 447 | CG10089-PD | 1..197 | 1..197 | 1032 | 100 | Plus |
