BS23610.complete Sequence
1307 bp assembled on 2011-02-16
GenBank Submission: KX805579
> BS23610.complete
GAAGTTATCAGTCGACATGTTTGGAAGACAAAGTGGACTGGGTAGTTCCA
GCAACAGCAGCAACCTGGTGGAGTTCCGCGCAGGTCGCATGAACATGGTG
GGCAAGATGGTGCATCCGGATCCGCGCAAGGGCCTGGTCTACATGACCCA
GAGTGACGATGGCCTGATGCACTTCTGCTGGAAGGATCGCACCTCCGGCA
AGGTGGAGGACGATCTCATCGTCTTCCCCGATGACTTCGAGTACAAGCGC
GTCGATCAGTGCAAGACGGGCCGTGTCTATGTGCTTAAGTTCAAGTCATC
GACACGCCGCATGTTCTTCTGGATGCAGGAGCCCAAGACGGACAAGGACG
ACGAGCAGTGCCGCCGCATCAACGAGCTGCTGAACAACCCACCATCCGCC
CACCAGCGCGGCGGCGGCGGCAGCAACGACGGAGACCTCCAGTACATGCT
CAACAACATGTCGCAGCAGCAGCTGATGCAGCTCTTCGGCGGCGTTGGCC
AGATGGGTGGTCTCAGCTCGCTGCTGGGCCAAATGAACTCCCGGACGCCC
TCGTCGCGCAACACCTCCTCATCGGGTGGCGGTGGGGCATCGGCCTTGCA
GACGCCCGAAAACGTCAGTGTGCCGCGCACTCCGAGCGCTCCATCGAAAT
CGGGCAGCAGCCGCAGCAGCAGCAATGTGAACTCGCAGGTCGGCGAAGGT
GCCGGCTCTTCCGTTGATGCGGATGCCCCCGGTAAGAACTCAACCACATC
GACCACAACGGCGTCAAAATCGACCGGAGCCTATGCCAATCCATTCCAAG
CCTACTTATCCAATCTCTCCCCCGAACATGGCGCAGGACGATCCCTGAAT
ATTGACCTCTCGACGGCCCTACCCGGCGCCGATGCCATCAATCAGATAAT
TGCCGATCCGGAGCATGTCAAGACGCTGATCGTGCACCTGCCCGAGTCGG
AGGATGTGGACGATGATCGCAAGCAGCAGATCAAGGACAATATCACCTCC
CCACAGTTCCAGCAGGCTCTGGCCCAGTTCTCCAGTGCCCTGCAATCGGC
CCAGCTGGGACCTGTGATCAAGCAATTCGAGTTGTCCAACGAAGCAGTGG
CCGCCGCCTTCTCTGGCAATCTGGAGGATTTTGTGCGTGCTCTGGAGAAG
AGTCTGCCCCCCGGTGCCACCATGGGTGGCAAACCCTCCGCCAGCGAGAA
GAAGGCCAGCGATCCCGAAACCCCAACTTCAGTGGCCCGCGATGAGAACA
CAGATCCCGCTACCGAAAAACAGGAGGAGAAGCAAAAGTAGAAGCTTTCT
AGACCAT
BS23610.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:37:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn13-RE | 1275 | CG13349-PE | 1..1275 | 17..1291 | 6285 | 99.5 | Plus |
| Rpn13-RD | 1275 | CG13349-PD | 1..1275 | 17..1291 | 6285 | 99.5 | Plus |
| Rpn13-RG | 1275 | CG13349-PG | 1..1275 | 17..1291 | 6285 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:37:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn13-RE | 1495 | CG13349-RE | 120..1395 | 16..1291 | 6290 | 99.5 | Plus |
| Rpn13-RD | 1482 | CG13349-RD | 107..1382 | 16..1291 | 6290 | 99.5 | Plus |
| Rpn13-RG | 1495 | CG13349-RG | 120..1395 | 16..1291 | 6290 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:37:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13958645..13959398 | 1291..538 | 3710 | 99.5 | Minus |
| 2R | 25286936 | 2R | 13959568..13960089 | 537..16 | 2580 | 99.6 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:37:35 has no hits.
BS23610.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-09 09:18:34 Download gff for
BS23610.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13349-RE | 113..1381 | 23..1291 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:48:49 Download gff for
BS23610.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn13-RG | 127..1395 | 23..1291 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:50:01 Download gff for
BS23610.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn13-RG | 127..1395 | 23..1291 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:50:01 Download gff for
BS23610.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13958645..13959398 | 538..1291 | 99 | <- | Minus |
| 2R | 13959568..13960082 | 23..537 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:48:49 Download gff for
BS23610.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9846150..9846903 | 538..1291 | 99 | <- | Minus |
| arm_2R | 9847073..9847587 | 23..537 | 99 | | Minus |
BS23610.pep Sequence
Translation from 16 to 1290
> BS23610.pep
MFGRQSGLGSSSNSSNLVEFRAGRMNMVGKMVHPDPRKGLVYMTQSDDGL
MHFCWKDRTSGKVEDDLIVFPDDFEYKRVDQCKTGRVYVLKFKSSTRRMF
FWMQEPKTDKDDEQCRRINELLNNPPSAHQRGGGGSNDGDLQYMLNNMSQ
QQLMQLFGGVGQMGGLSSLLGQMNSRTPSSRNTSSSGGGGASALQTPENV
SVPRTPSAPSKSGSSRSSSNVNSQVGEGAGSSVDADAPGKNSTTSTTTAS
KSTGAYANPFQAYLSNLSPEHGAGRSLNIDLSTALPGADAINQIIADPEH
VKTLIVHLPESEDVDDDRKQQIKDNITSPQFQQALAQFSSALQSAQLGPV
IKQFELSNEAVAAAFSGNLEDFVRALEKSLPPGATMGGKPSASEKKASDP
ETPTSVARDENTDPATEKQEEKQK*
BS23610.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:32:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn13-PE | 424 | CG13349-PE | 1..424 | 1..424 | 2181 | 100 | Plus |
| Rpn13-PD | 424 | CG13349-PD | 1..424 | 1..424 | 2181 | 100 | Plus |
| Rpn13-PG | 424 | CG13349-PG | 1..424 | 1..424 | 2181 | 100 | Plus |
| Rpn13-PF | 389 | CG13349-PF | 1..389 | 1..424 | 1955 | 91.7 | Plus |
| Rpn13-PB | 389 | CG13349-PB | 1..389 | 1..424 | 1955 | 91.7 | Plus |
