BS23612.complete Sequence
1778 bp assembled on 2011-02-16
GenBank Submission: KX801632
> BS23612.complete
GAAGTTATCAGTCGACATGCCAATGGTGATGCCATGTCGTTCGCGAGCTG
CGATGAAACTGCACCCGGATTGCTATGATCGACTTAAGAAGCCGATTTAT
CTGGAAACGCCACCATTATCGACCGTCGAAGAGGAGCCACTATGTGGCGT
ACGCCGTGATAGACCCGTAAAGCCAAAGGTTCAGAGGCGACCATTACCGC
CCGGCACACGTCTACCGAATCCAGTAGCCGTGCCTGGACAGAAGATCACA
CGTTCGGCGGTGGGTGGCGGTAAGGCGCCACCGCGAGCCCGCAAATACGA
CGGTGCCAAGGCCACGTTCTTTCACATCAAGGGTCAATCATGGGAATCCA
AGGGCTATGCGGAGCTCTCACAGTGCGAACTGGATCGCATGCGGGCATCG
AGGCCGCGTACCACCGAGGAGCGTCGCGCGGAACAGGATCGCCGGATGGA
GGAGCAGCAATATCACACAGCCGAAGCAGAACGTATGCGTAACTATTTCC
ACGACATTGATGAGCAGCGCAGGGAGAAGGAGCGCGAGGCCCAGAAGAGG
GACGATGACGAGGCCGATGAGGATGTCAACGAGGATCGGCGTGCGGAGGC
CAAACGATTGCAGGTACTACACCGCGCCTTGGATGCCAAATACGAGTCAG
ATGTGCGAGTTAAGGATGCCACGCGTGCGATATCCGAGGCCAAATGCAGT
GCCATGTGGACGGCTCAGATACAGGAAAGGAAGCTACTCAATCGCATTCA
ACTCGATCATGACGAGGAGATGGCCCGCAAGAATCGTGACTACAACAATG
CCAAATGGGGCACGGTGGAGCAGCAAGATCAGGCCGAAGAGGAGAGGCGC
CGGCAATTTGGCAACGCAGTGCGTGAACAAATCACTGATCGCGAAAAGTT
ACGTTTCCTGGCCCAGGATCGTCTGCGATTGGAGGCGCGAGACTTGCGTG
CCGCCGTCGATGAGTATAAAAAGGCTGAATTGGCAGAGGGCGAGATGAAA
TCGCGCCGTAAGCTGGCCTATCGGGATGAATTGAATAAGTATACGAAATT
GCATCGGAATTTCGTACGGATGATGTGCGAACAGGATCAAAGAGATGAGA
ACAGGGCCTACGAGTATCTAAAGCTCAAGGAGCAGCAATTGAAACAACAG
CGAGCGGAACGCGAAGCCATCGCGGCGGATGAGAAACGCAAACGGGATGT
TCTCTTTGCAGTCGGCCAAAAGATTCTCGATGCTAAGGATAATCGCGAGG
AGATGCATTTCCTGGCGGAACACGAACGCCTCGAACGAAAGTACAGAGAA
AACGAACGTAAGGCAGCCGAAAAGGAACGCAAAATGGCCGCCGAACTCAA
GCGTGCCAATATGGAGCAAATGGAGCATCTTAGCCAAATGAAGGCCTGCT
TCTATGTGCAACGTGAACGCGAACTAAAGGAGATGATCGAGTATCGAAAG
AAGCACGAGGAGCAAATGAAGCGCGAGGCCGAGGAGCAGGCCATCAAAAA
GGCCTGTCTGCGCTCCAGTGTCTCGTGCCAAATCGAAGAACGGGAGAAGG
CTCGTCGCCGCGAACTGGAGGAGGAACACTTGGCCTTCGAAAGGGAGCGG
GCAGCTGAGGCGCAGCGGCAAAAGGAAATCGATACGGTGATCACAGTCAA
ACTGGATGATCTACAAAAGCGCGGATGTCTGCCCAATTTGGCGGTGCAAT
CGCTAAAGGGTCGTGTCGCCAATGCTGGCAACAAAAAGAAGCTGGGCGCT
GAATTCACTTAGAAGCTTTCTAGACCAT
BS23612.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:39:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5062-RA | 1746 | CG5062-PA | 1..1746 | 17..1762 | 8640 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:39:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5062-RA | 2124 | CG5062-RA | 190..1936 | 17..1763 | 8645 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:39:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5180370..5181526 | 1763..607 | 5725 | 99.7 | Minus |
| X | 23542271 | X | 5181581..5182180 | 616..17 | 2955 | 99.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:39:24 has no hits.
BS23612.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-09 09:18:36 Download gff for
BS23612.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5062-RA | 190..1935 | 17..1762 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:49:53 Download gff for
BS23612.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5062-RA | 190..1935 | 17..1762 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:50:54 Download gff for
BS23612.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5062-RA | 190..1935 | 17..1762 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:50:54 Download gff for
BS23612.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5180371..5181519 | 614..1762 | 99 | <- | Minus |
| X | 5181584..5182180 | 17..613 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:49:53 Download gff for
BS23612.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5074404..5075552 | 614..1762 | 99 | <- | Minus |
| arm_X | 5075617..5076213 | 17..613 | 99 | | Minus |
BS23612.pep Sequence
Translation from 16 to 1761
> BS23612.pep
MPMVMPCRSRAAMKLHPDCYDRLKKPIYLETPPLSTVEEEPLCGVRRDRP
VKPKVQRRPLPPGTRLPNPVAVPGQKITRSAVGGGKAPPRARKYDGAKAT
FFHIKGQSWESKGYAELSQCELDRMRASRPRTTEERRAEQDRRMEEQQYH
TAEAERMRNYFHDIDEQRREKEREAQKRDDDEADEDVNEDRRAEAKRLQV
LHRALDAKYESDVRVKDATRAISEAKCSAMWTAQIQERKLLNRIQLDHDE
EMARKNRDYNNAKWGTVEQQDQAEEERRRQFGNAVREQITDREKLRFLAQ
DRLRLEARDLRAAVDEYKKAELAEGEMKSRRKLAYRDELNKYTKLHRNFV
RMMCEQDQRDENRAYEYLKLKEQQLKQQRAEREAIAADEKRKRDVLFAVG
QKILDAKDNREEMHFLAEHERLERKYRENERKAAEKERKMAAELKRANME
QMEHLSQMKACFYVQRERELKEMIEYRKKHEEQMKREAEEQAIKKACLRS
SVSCQIEEREKARRRELEEEHLAFERERAAEAQRQKEIDTVITVKLDDLQ
KRGCLPNLAVQSLKGRVANAGNKKKLGAEFT*
BS23612.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:14:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5062-PA | 581 | CG5062-PA | 1..581 | 1..581 | 2990 | 100 | Plus |
| CG11449-PA | 538 | CG11449-PA | 68..529 | 116..569 | 434 | 24.2 | Plus |
| CG2839-PA | 826 | CG2839-PA | 310..772 | 110..575 | 310 | 25 | Plus |
| CG2839-PA | 826 | CG2839-PA | 304..722 | 110..537 | 309 | 24.8 | Plus |
| CG2839-PA | 826 | CG2839-PA | 285..697 | 121..537 | 302 | 24.2 | Plus |
| CG2839-PA | 826 | CG2839-PA | 280..660 | 129..537 | 262 | 24 | Plus |
| CG2839-PA | 826 | CG2839-PA | 263..631 | 137..537 | 228 | 23.9 | Plus |
| CG2839-PA | 826 | CG2839-PA | 256..595 | 202..537 | 219 | 24.8 | Plus |
| rgn-PD | 800 | CG6014-PD | 341..747 | 126..551 | 212 | 22.8 | Plus |
| rgn-PA | 800 | CG6014-PA | 341..747 | 126..551 | 212 | 22.8 | Plus |
| rgn-PD | 800 | CG6014-PD | 428..789 | 123..495 | 203 | 23.2 | Plus |
| rgn-PD | 800 | CG6014-PD | 391..798 | 129..548 | 202 | 22.9 | Plus |
| rgn-PD | 800 | CG6014-PD | 330..711 | 135..539 | 196 | 24.8 | Plus |
