BS23621.complete Sequence
1502 bp assembled on 2011-01-25
GenBank Submission: KX803465
> BS23621.complete
GAAGTTATCAGTCGACATGCCGGCGATGGATGTGGACACTGCTCTCTTAA
CCATAGGTTATGGGCTTGGTCAGGTGATCATTTTCATGGTGAGTTTCTTC
ATATACATGTACTCCGTAACTGAGTCCATGACTGCTGGCTATCTCGTGGT
CCTGACCTCCTGCGAGTTCGATACCTCGCCTAAAGAGAAGACCCTATTGG
CCAATTCCCTGCTGGGCGGGATGGTGGCTTCCGGATTGTTCATTGGCTTC
CTGGCGGACAGGTATGGCCGCAAGTTCGTTATCCGATTGGCACTCGTAGG
AGCGCTGTCCTTCTCGGTGATTTCTGCTTTAATGCCGGATCTCTATTCGC
TTTCTGTGATTCGGATTATTGTTGGAACTTTCCTCTCGGCGGTTGCATCT
TTGCAGGTAGGATTCCTCGGGGAGTTCCACGCAATCAAGTGGCGGCCAAT
AACGGTAGCCATTTGTAGCCAATCTCAGGGTCTAGCTCTCATCTACTGTC
CACTGGTGGCCATGGCTATTCTGCCCAACAACTTCAATGTGGACCTCAGC
AGCAGCTACAATCTACGCGTATGGCGATTCCTAATGATGTTCTTCATGAT
TCCCGGCTGGTTGGCCCTCGTCGGAATTTGTCTGGTGCCGGAGACACCAC
ATTTTCTCATGTCTGTCAATCGGCCGGACAAGGCCCTCCTGGCCCTTAAA
TGGATATGCCGGATGAACAGGAAGAAGTGGGAGGACGTCGACATAACTTT
GAGTGAAGAGAAATCAAGCACAAACGATCAGGAAGGCTTCTGGAAGACTG
TGTGGTACGAGTATAAGCTGCTCTTTTCCAAACCTCACGTCTTCAAGTTT
TTTATTTGTCTCTTTCTTATTTTTGGGATATTTTTTACATCCATTGGATT
GGGCATCTGGTTTCCAGTTATCCGCAACATGGACAACTCTGGCTCCAACC
GTTTATGCGACCTCGTCAATAATAATCCAACATTTATAAATCATGAAGCG
GATGATACCAATGGAACGGATTCGGAGTCACCAAAGTGCAACGACGAGAT
GACCAACCTGATCGATCCGGTCTACTACGGCTTTACCTACATTGGATGTT
TTATCCTGGCCTCGGTGTTGGTACATTGGATGACCCGGAAGTATGTAATT
GCCCTGCACATCTTGATCTCTATGATCCTGGGAATTTCGCTTAATATAAT
GAAGCAGCCGACAGTGGTGCTAATCTTCTTCGTCCTAATGATGGTATTGC
CTGGTGTCCTGATCCCACTGGCCACCTCGGTACTAGTCGACTGTCTTCCC
GTCAATTTGCGAGGAAAGGCACTCTGTATGGTGCGATCCTTGGCGCGGTT
TGGTGGCGTTTTGGGTAGCACTATGATTGGACTCTTCATAAGGGTTACGT
GTGATGTAACCTTTAACATCTTCAATCTCTGCCTGGCAATTTGCGTCGTT
TTGGCTGTCTTTCAACCCAAGGACATAGTGACATAAAAGCTTTCTAGACC
AT
BS23621.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:48:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33233-RC | 1470 | CG33233-PC | 1..1470 | 17..1486 | 7125 | 99 | Plus |
| CG33233-RE | 456 | CG33233-PE | 1..365 | 17..381 | 1750 | 98.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:48:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33233-RC | 1612 | CG33233-RC | 71..1540 | 17..1486 | 7125 | 99 | Plus |
| CG33233-RE | 1049 | CG33233-RE | 498..1004 | 382..888 | 2475 | 99.2 | Plus |
| CG33233-RE | 1049 | CG33233-RE | 71..435 | 17..381 | 1750 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:48:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2660769..2661319 | 889..1439 | 2665 | 98.9 | Plus |
| 3L | 28110227 | 3L | 2660194..2660700 | 382..888 | 2475 | 99.2 | Plus |
| 3L | 28110227 | 3L | 2659805..2660131 | 55..381 | 1560 | 98.5 | Plus |
| 3L | 28110227 | 3L | 2661379..2661429 | 1436..1486 | 240 | 98 | Plus |
| 3L | 28110227 | 3L | 2659709..2659750 | 17..58 | 210 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:48:27 has no hits.
BS23621.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:18:03 Download gff for
BS23621.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33233-RC | 71..1538 | 17..1484 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:04:48 Download gff for
BS23621.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33233-RC | 71..1538 | 17..1484 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:49:31 Download gff for
BS23621.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33233-RC | 71..1538 | 17..1484 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:49:31 Download gff for
BS23621.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2659709..2659748 | 17..56 | 100 | -> | Plus |
| 3L | 2659807..2660131 | 57..381 | 98 | -> | Plus |
| 3L | 2660194..2660700 | 382..888 | 99 | -> | Plus |
| 3L | 2660769..2661319 | 889..1439 | 98 | -> | Plus |
| 3L | 2661383..2661427 | 1440..1484 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:04:48 Download gff for
BS23621.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2659807..2660131 | 57..381 | 98 | -> | Plus |
| arm_3L | 2659709..2659748 | 17..56 | 100 | -> | Plus |
| arm_3L | 2660194..2660700 | 382..888 | 99 | -> | Plus |
| arm_3L | 2660769..2661319 | 889..1439 | 98 | -> | Plus |
| arm_3L | 2661383..2661427 | 1440..1484 | 100 | | Plus |
BS23621.pep Sequence
Translation from 16 to 1485
> BS23621.pep
MPAMDVDTALLTIGYGLGQVIIFMVSFFIYMYSVTESMTAGYLVVLTSCE
FDTSPKEKTLLANSLLGGMVASGLFIGFLADRYGRKFVIRLALVGALSFS
VISALMPDLYSLSVIRIIVGTFLSAVASLQVGFLGEFHAIKWRPITVAIC
SQSQGLALIYCPLVAMAILPNNFNVDLSSSYNLRVWRFLMMFFMIPGWLA
LVGICLVPETPHFLMSVNRPDKALLALKWICRMNRKKWEDVDITLSEEKS
STNDQEGFWKTVWYEYKLLFSKPHVFKFFICLFLIFGIFFTSIGLGIWFP
VIRNMDNSGSNRLCDLVNNNPTFINHEADDTNGTDSESPKCNDEMTNLID
PVYYGFTYIGCFILASVLVHWMTRKYVIALHILISMILGISLNIMKQPTV
VLIFFVLMMVLPGVLIPLATSVLVDCLPVNLRGKALCMVRSLARFGGVLG
STMIGLFIRVTCDVTFNIFNLCLAICVVLAVFQPKDIVT*
BS23621.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:10:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33233-PC | 489 | CG33233-PC | 1..489 | 1..489 | 2536 | 100 | Plus |
| CG31106-PB | 513 | CG31106-PB | 25..512 | 5..484 | 609 | 27.6 | Plus |
| CG33233-PE | 151 | CG33233-PE | 1..128 | 1..128 | 595 | 96.1 | Plus |
| CG31103-PB | 506 | CG31103-PB | 16..501 | 5..484 | 572 | 26.2 | Plus |
| CG33234-PE | 473 | CG33234-PE | 3..459 | 5..478 | 501 | 28.2 | Plus |
