Clone BS23637 Report

Search the DGRC for BS23637

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:236
Well:37
Vector:pDNR-Dual
Associated Gene/TranscriptI-3-RB
Protein status:BS23637.pep: full length peptide match
Sequenced Size:680

Clone Sequence Records

BS23637.complete Sequence

680 bp assembled on 2011-01-25

GenBank Submission: KX800621

> BS23637.complete
GAAGTTATCAGTCGACATGGATTCGAATTGCGATTTATCGATGGTCAATG
GTCAAACGGAGCCCAAAGACCCAAAATGGGCGTCGTCGTCAACCCAGATA
ACTTCTCGGGCATCGGAAACCTTTTCCGGAGTTGGCTCGGCGATAAGCAC
TGAAACGTCCTTGCAGCCAGTGGCCGCGCCCACGATGTACTGCCTCCGAT
TGGCGCAGCAGAGGCCGATAACCGAACGGCACGTCCACTTTCATGCCGGC
GTTATCGATAACGAGCACATGAACCGGCGCAAATCGAAATGCTGCTGCAT
CTATCGAAAGCCACATCCTTTCGGCGAGAGTTCGTCCTCCACGGACGACG
AGTGCGAACACTGCTTTGGTCATCCCGAAGTGAGAACTCGCAATCGGTTG
GAAAAACAGCGGATACAGGAACAGCAAAACGGGTGCAGTTGCTGTCATCA
TCACCATCGACTTCATAGTAATCGGAATAATCGACCGCCTACCGAAGAGA
TCGCGCAGCATAAGGATGATCTGGCCAAAGAGGAACCAAAATCGGTAGTC
AACAATGAAAGTAGTCTAAAACTTTTAAACGAGGAAAATGTAAAATCATC
TAAACCAGAAAAAAAAAATAATTCAAATAACCGCCTCGAAGTAACTTTTG
TAGAGCTTGATTAAAAGCTTTCTAGACCAT

BS23637.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:49:33
Subject Length Description Subject Range Query Range Score Percent Strand
I-3-RB 648 CG42707-PB 1..648 17..664 3210 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:49:34
Subject Length Description Subject Range Query Range Score Percent Strand
I-3-RB 813 CG11233-RB 86..735 17..666 3220 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:49:31
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20881892..20882541 666..17 3220 99.7 Minus
Blast to na_te.dros performed 2014-11-26 15:49:32
Subject Length Description Subject Range Query Range Score Percent Strand
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 1203..1249 582..631 107 74 Plus

BS23637.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:18:04 Download gff for BS23637.complete
Subject Subject Range Query Range Percent Splice Strand
CG42707-RB 86..731 17..662 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:04:59 Download gff for BS23637.complete
Subject Subject Range Query Range Percent Splice Strand
I-3-RB 86..731 17..662 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:49:56 Download gff for BS23637.complete
Subject Subject Range Query Range Percent Splice Strand
I-3-RB 86..731 17..662 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:49:56 Download gff for BS23637.complete
Subject Subject Range Query Range Percent Splice Strand
X 20881896..20882541 17..662 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:04:59 Download gff for BS23637.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 20752923..20753568 17..662 99   Minus

BS23637.pep Sequence

Translation from 16 to 663

> BS23637.pep
MDSNCDLSMVNGQTEPKDPKWASSSTQITSRASETFSGVGSAISTETSLQ
PVAAPTMYCLRLAQQRPITERHVHFHAGVIDNEHMNRRKSKCCCIYRKPH
PFGESSSSTDDECEHCFGHPEVRTRNRLEKQRIQEQQNGCSCCHHHHRLH
SNRNNRPPTEEIAQHKDDLAKEEPKSVVNNESSLKLLNEENVKSSKPEKK
NNSNNRLEVTFVELD*

BS23637.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:10:51
Subject Length Description Subject Range Query Range Score Percent Strand
I-3-PB 215 CG11233-PB 1..215 1..215 1163 100 Plus
CG13994-PB 163 CG13994-PB 6..147 30..167 278 43.1 Plus
CG13994-PA 163 CG13994-PA 6..147 30..167 278 43.1 Plus