BS23656.complete Sequence
1493 bp assembled on 2011-02-07
GenBank Submission: KX803829
> BS23656.complete
GAAGTTATCAGTCGACATGAGCAGTCTGATCAACTTCCTCAACCCAAAGC
TTAAGCCCTCCGTAGAGACCGATGCCGTCTGCGAGGATGGCTACACTGCG
GCCAATCTGGTGGCCGACGACGTCGAGCAGCTGGAGCGTGGATTCATGTG
CTTCGCCGTCTGCAAGCCGCCCATAGAGATCGTATTCGACTTCCCCAAGG
CGGTGGACATGAAGGTCATCAAGCTGTGGCCCTCCTGCGGAGCCCTACGA
TCCACTGCCTTCGAGCTGCATGGACGACACGATGGTATCTGGGAAAGGGT
TGCCTTCGTACGCGATCTGGGGCGTGGCGTGGACTCGGTGACCTTCTGCT
ACCAGAGCGACTACAACTCACGGAGCAGCTCCAACTCGGAGCAGAGCGAG
AAGGTGTTCTTCTTCAAGTCCGCCCACAAGATCCTTGCCAGCACAAACAG
CGTCAAGGTGGTGATCCGGGCCACGGAAAGGTGTCCTCCAGTGCTGAGGA
AAGTTCAGATGTGGGGACTGCCCGCTCGTTCGCTGGACAAAGCCGATCGC
GAGCTGGTCAAGACCATCTGGAGCGAGATAAGCGATCCCTACGGCCAGAG
GGACGCGGCCCAAACGCCCACCGGGCAGAGATCACCACCGCGGAATGTTC
CAGAGCTCAGGGACCAGTCGACCCTCTCTATTCCTGAAGAGTTCCTCGAC
TCCATCACCTGGGAGCTAATGATCTTCCCCACCGTGCTGCCATCTGGAAA
AGTGGTGGACCAGTCCACCATCGACAAGCACGCCGAGGAGGAGGCCAAGT
GGGGTCGCCAGCCCTCGGATCCGTTTACAGGCCTGGAGTTCAATGCGCAA
CGCAAGGCGATTCTCCACCTGGCCCTAAAAGCGCGCATCGAGAAGTTCCT
CATGGAGAATTCGGAGCACTTCAAGGCGGTGCCCCGTTCGCTGGGCACCT
CTCGCCAGCGTCGTCGTCACGCCTCGCAGTTCGCCAGCAGCACCTGTCAG
CCGGGACAGATTAGTCCGGCTGCCGGAACCTATTCGGCACTGAGCAACGC
CTACAAGCAGCAGCAGCGGAAGAGCAGGGCCACTGCCACGGCCACATCCT
CATCGGCGGCATCCTTCGGCGGATCTCCGCACTCGCCGCCGGCGGCCAAA
AGAGCAAGGCACAGCCAACACGGTAGCGCCTGTGCCACGGTGACCTCGGC
CACAACCTCCATCGATCAGGCCATTCAGCAGGCGCTGCAGAAGGTGACGC
GCTTTAGCCAGTTGCCATCGAACTCCAGCGCAGGCTCGGGATCCTCAAGT
GCTCCGCCCGCCAGCTGCATCAACTGCCGGAGTGCGCAGTTCGGCTACGA
AATCCGCACCTGCCGACATCTGGTCTGCCGGGAGTGCCTGGTGCTCCTCT
CGCAGGATCAGCAGTGCGTGTGCAAAGTATTCTTCCGCTGCGCCGACGTC
GAGCGCTACCACAAGCTGGATCCTTAAAAGCTTTCTAGACCAT
BS23656.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:13:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2218-RB | 1461 | CG2218-PB | 1..1461 | 17..1477 | 7275 | 99.9 | Plus |
| CG2218-RA | 1461 | CG2218-PA | 1..1461 | 17..1477 | 7275 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:13:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2218-RB | 2198 | CG2218-RB | 339..1805 | 17..1483 | 7290 | 99.8 | Plus |
| CG2218-RA | 2529 | CG2218-RA | 437..1903 | 17..1483 | 7290 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:13:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30426053..30426815 | 1483..721 | 3770 | 99.6 | Minus |
| 3R | 32079331 | 3R | 30427136..30427840 | 721..17 | 3525 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:13:22 has no hits.
BS23656.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-07 11:21:43 Download gff for
BS23656.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2218-RA | 437..1895 | 17..1475 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:50:56 Download gff for
BS23656.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2218-RA | 437..1895 | 17..1475 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:54:42 Download gff for
BS23656.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2218-RA | 437..1895 | 17..1475 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:54:42 Download gff for
BS23656.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30426061..30426814 | 722..1475 | 99 | <- | Minus |
| 3R | 30427136..30427840 | 17..721 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:50:56 Download gff for
BS23656.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26251783..26252536 | 722..1475 | 99 | <- | Minus |
| arm_3R | 26252858..26253562 | 17..721 | 100 | | Minus |
BS23656.pep Sequence
Translation from 16 to 1476
> BS23656.pep
MSSLINFLNPKLKPSVETDAVCEDGYTAANLVADDVEQLERGFMCFAVCK
PPIEIVFDFPKAVDMKVIKLWPSCGALRSTAFELHGRHDGIWERVAFVRD
LGRGVDSVTFCYQSDYNSRSSSNSEQSEKVFFFKSAHKILASTNSVKVVI
RATERCPPVLRKVQMWGLPARSLDKADRELVKTIWSEISDPYGQRDAAQT
PTGQRSPPRNVPELRDQSTLSIPEEFLDSITWELMIFPTVLPSGKVVDQS
TIDKHAEEEAKWGRQPSDPFTGLEFNAQRKAILHLALKARIEKFLMENSE
HFKAVPRSLGTSRQRRRHASQFASSTCQPGQISPAAGTYSALSNAYKQQQ
RKSRATATATSSSAASFGGSPHSPPAAKRARHSQHGSACATVTSATTSID
QAIQQALQKVTRFSQLPSNSSAGSGSSSAPPASCINCRSAQFGYEIRTCR
HLVCRECLVLLSQDQQCVCKVFFRCADVERYHKLDP*
BS23656.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:03:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2218-PB | 486 | CG2218-PB | 1..486 | 1..486 | 2532 | 100 | Plus |
| CG2218-PA | 486 | CG2218-PA | 1..486 | 1..486 | 2532 | 100 | Plus |
