BS23667.complete Sequence
879 bp assembled on 2011-01-25
GenBank Submission: KX802999
> BS23667.complete
GAAGTTATCAGTCGACATGTCCGCTCCGGAGAACAGTTGTAGGCGGTGGA
TAAAAAAAAATTGGGTTGACGGTCCATGCAAGAAGTGCTTCGAATCCACC
TGCGGACCATGCATCGATTACAGGGTATCACCGCCTGCAGCAGACTTGCC
TGAGCCCCAGGCGGAGGTTGTTAAGGCGGTCATTGAACCGGATGGACCTG
TGCGTCAGGAGATCAACATCCGGGCGGAGTGCAGCAAGGGACGTCCGCTT
CTGGAATCCGACAAGGACAAACTGCGATGCTGTACCATGTGCGTGGCTCA
GGAGCAGAATCTGCACCCTAATCTCTGCTCGGCGCAATGCCGGCCACTCA
AAACCTATTTGCATTTGAATGAGTGGACAAAGCGACCCCTTCCCAAGCCC
ACATACAAACATTCTGTTATCCTGGACAATAACACCATAGTAGGTCGGTG
CTTCCCGATGAAATTCCAGCTGAGACGCACAAAAAAGAATTGCCTGGACT
GCGGAAATGAACTTTACTACCGGTATCCCATCACAAATAACAGCGATCTG
CTGCTGATCAAGAACTGCTGCGAAGTGGAGGTCTATCCCGCCAAGAAAGT
GGAAAATATGAACAACGTGAGGGTGACCAAGATATCGGGAGTCAAGAAGT
TCGCCAACAGTCTGCTGAAGGAGCACTCCGAGTGCCGGCTGTTCACCTTG
GCCAGCCAACTTGCGAAGCAGAAACCACCTTTGGCGCCTGATGTTAGGAT
GAGTCGGATGAGCAGGAAGAGCCGGAAGAGCCGAAAGAGCCGGAAGAGCA
GCAGAAAGAGTTCACTGTTCGGCAATAAAAAAGGGAAAAAATAAAAGCTT
TCTAGACCATTCGTTTGGCGCTTAAAGGG
BS23667.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:52:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30278-RC | 828 | CG30278-PC | 1..828 | 17..844 | 3930 | 98.3 | Plus |
| CG30278-RB | 828 | CG30278-PB | 1..828 | 17..844 | 3930 | 98.3 | Plus |
| CG30278-RA | 828 | CG30278-PA | 1..828 | 17..844 | 3930 | 98.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:52:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30278-RC | 1164 | CG30278-RC | 104..935 | 17..848 | 3935 | 98.2 | Plus |
| CG30278-RB | 1004 | CG30278-RB | 64..895 | 17..848 | 3935 | 98.2 | Plus |
| CG30278-RA | 932 | CG30278-RA | 104..931 | 17..844 | 3930 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:52:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22217514..22217990 | 848..372 | 2250 | 98.1 | Minus |
| 2R | 25286936 | 2R | 22218041..22218397 | 373..17 | 1695 | 98.3 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:52:49 has no hits.
BS23667.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:18:07 Download gff for
BS23667.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30278-RA | 102..908 | 17..823 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:05:34 Download gff for
BS23667.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30278-RA | 102..908 | 17..823 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:50:56 Download gff for
BS23667.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30278-RB | 64..895 | 17..848 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:50:56 Download gff for
BS23667.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22217514..22217988 | 374..848 | 98 | <- | Minus |
| 2R | 22218041..22218397 | 17..373 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:05:34 Download gff for
BS23667.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18105019..18105493 | 374..848 | 98 | <- | Minus |
| arm_2R | 18105546..18105902 | 17..373 | 98 | | Minus |
BS23667.pep Sequence
Translation from 16 to 843
> BS23667.pep
MSAPENSCRRWIKKNWVDGPCKKCFESTCGPCIDYRVSPPAADLPEPQAE
VVKAVIEPDGPVRQEINIRAECSKGRPLLESDKDKLRCCTMCVAQEQNLH
PNLCSAQCRPLKTYLHLNEWTKRPLPKPTYKHSVILDNNTIVGRCFPMKF
QLRRTKKNCLDCGNELYYRYPITNNSDLLLIKNCCEVEVYPAKKVENMNN
VRVTKISGVKKFANSLLKEHSECRLFTLASQLAKQKPPLAPDVRMSRMSR
KSRKSRKSRKSSRKSSLFGNKKGKK*
BS23667.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:11:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30278-PC | 275 | CG30278-PC | 1..275 | 1..275 | 1487 | 100 | Plus |
| CG30278-PB | 275 | CG30278-PB | 1..275 | 1..275 | 1487 | 100 | Plus |
| CG30278-PA | 275 | CG30278-PA | 1..275 | 1..275 | 1487 | 100 | Plus |
| CG4286-PA | 219 | CG4286-PA | 92..217 | 96..221 | 172 | 33.1 | Plus |
