Clone BS23670 Report

Search the DGRC for BS23670

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:236
Well:70
Vector:pDNR-Dual
Associated Gene/TranscriptTim17a1-RA
Protein status:BS23670.pep: full length peptide match
Sequenced Size:719

Clone Sequence Records

BS23670.complete Sequence

719 bp assembled on 2011-01-25

GenBank Submission: KX806048

> BS23670.complete
GAAGTTATCAGTCGACATGGAGTACAATCGCCAGCCGTGTCCCATTAGGA
TTGTGGAGGATTGCGGATGTGCCTTCATGATGGGCACCATCGGTGGTTCG
CTGTTCGAGTTCCTCAAGGGTTTCCGTAACGCTCCTACCGGATTGCAGCG
CAGACTTTATGGTGGCATTGATTTGGTGAAGATGAGAACGCCGTCCATTG
CCGGCAGCTTTGCCGTTTGGGGTGCCACTTTCAGCACAGTGGATTGCGCC
CTGGTCCACTATCGCCAGAGGGAGGATGCCTGGAACTCGATACTCAGTGG
AGCGGCCACTGGTGGGATATTGGCAGCCCGTAATGGCATTCGGGCCATGG
CCAACAGTGCTCTGGTGGGCTGTCTGGTGCTGGCCATGATTGAAGGAGCC
GGTGCAGCAGTGGCCACCATTAATGCAGCCGACAAAGGTGCAGGGATAGT
CATCAAGCCGCAGCGGGCCCAGTGGGAGGCCATACTGGAGACTATTGATC
CGAAGAGAGCGTCATCCACTCAAGATTTCGCACTGGCGGAGTTTGAACGG
GTGCTGGACAAATGTCGGGCGAGCAGGGAACCAAATTTACTTCAGGACAT
TCCGGTTAAGAGTCACGAGCGAGATTCCAAACAGAAGCCATTTTATTCCC
TCTTGGATCTGGTGAAACTGTCCCAGATGTTCTAGAAGCTTTCTAGACCA
TTCGTTTGGCCCTTAAAGG

BS23670.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:50:10
Subject Length Description Subject Range Query Range Score Percent Strand
Tim17a1-RB 669 CG10090-PB 1..669 17..685 3345 100 Plus
Tim17a1-RA 669 CG10090-PA 1..669 17..685 3345 100 Plus
Tim17a2-RA 675 CG14666-PA 1..411 17..427 870 80.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:50:12
Subject Length Description Subject Range Query Range Score Percent Strand
Tim17a1-RB 897 CG10090-RB 95..764 16..685 3350 100 Plus
Tim17a1-RA 1014 CG10090-RA 95..764 16..685 3350 100 Plus
Tim17a2-RA 991 CG14666-RA 180..592 15..427 880 80.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:50:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12363917..12364586 685..16 3350 100 Minus
3R 32079331 3R 5258735..5259147 427..15 880 80.9 Minus
2L 23513712 2L 15485053..15485138 230..315 190 81.4 Plus
Blast to na_te.dros performed on 2014-11-26 15:50:09 has no hits.

BS23670.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:18:05 Download gff for BS23670.complete
Subject Subject Range Query Range Percent Splice Strand
Tim17a1-RA 96..768 17..691 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:05:04 Download gff for BS23670.complete
Subject Subject Range Query Range Percent Splice Strand
Tim17a1-RA 96..768 17..691 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:50:08 Download gff for BS23670.complete
Subject Subject Range Query Range Percent Splice Strand
Tim17a1-RA 96..768 17..691 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:50:08 Download gff for BS23670.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12363913..12364585 17..691 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:05:04 Download gff for BS23670.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8189635..8190307 17..691 99   Minus

BS23670.pep Sequence

Translation from 16 to 684

> BS23670.pep
MEYNRQPCPIRIVEDCGCAFMMGTIGGSLFEFLKGFRNAPTGLQRRLYGG
IDLVKMRTPSIAGSFAVWGATFSTVDCALVHYRQREDAWNSILSGAATGG
ILAARNGIRAMANSALVGCLVLAMIEGAGAAVATINAADKGAGIVIKPQR
AQWEAILETIDPKRASSTQDFALAEFERVLDKCRASREPNLLQDIPVKSH
ERDSKQKPFYSLLDLVKLSQMF*

BS23670.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:10:54
Subject Length Description Subject Range Query Range Score Percent Strand
Tim17a1-PB 222 CG10090-PB 1..222 1..222 1142 100 Plus
Tim17a1-PA 222 CG10090-PA 1..222 1..222 1142 100 Plus
Tim17a2-PA 224 CG14666-PA 1..223 1..221 720 63.1 Plus
Tim17b-PB 173 CG40451-PB 3..138 2..137 481 64.7 Plus
Tim17b-PA 173 CG40451-PA 3..138 2..137 481 64.7 Plus