BS23679.complete Sequence
1379 bp assembled on 2011-02-07
GenBank Submission: KX801353
> BS23679.complete
GAAGTTATCAGTCGACATGCTTCCAATTCGGCAGAGTTTATACCAAAGAG
CTCAAACTCGATTTACAAAATTAAGATTTCCAAGATTTTTTAGCAAAGAC
GATTGCAATGGAAAGCAAGTAAAGAAGTTGAGCTTAAAAAATGTAGATGT
GGCTGGGAAAAGGGTTTTTATGAGAGTGGACTTTAATGTACCCATGAAAG
ATGGCAAAATAACCAACAACCAACGAATTGTTTCCGCACTTCCCAGTATT
AAATATGCCTTGGACAAGAAATGTAAGTCCTTGGTTTTGGCATCCCACTT
GGGGCGTCCGGATGGCAAAAAGAACAAAAAGTTTAGCCTGGAACCCGTGG
CCAAGGAGCTGGAGAGTGTGCTGGGCCAGCCGGTTCAATTCCTGGACGAC
TGCGTGGGTGATAGCACCCTGAGAGCTTTGAAGGATCCCTCCGACGGCAC
TGTGTTCCTGTTGGAGAATCTTCGTTTCTATGCCGAGGAGACGGGCAGCA
GCAAGGACGATAACAAGAAGAAGGTCAAAGCAGATCCCGCGAAGGTGAAG
GAATTCCGAGCCAAGTTGGCGCAGCTGGGCGAGATCTATGTGAACGATGC
CTTTGGAACAGCACATCGTCCGCATAGTTCCATGATGGGCGATGGCTACA
AGGTGCGAGCGGCTGGTTTCCTGCTGGACAAGGAACTGGAGTACTTTGCC
AAGGTTCTCCACGATCCGGCCAAGCCCTTTTTGGCCATTCTGGGTGGCGC
CAAGATAGCCGATAAAATTCCACTGATAACGAACCTCCTGAACAATGTAA
CGGCCATGATCATATCCGGTGGCATGGCCTTCACCTTTCTCAAAGTGCTC
AATGGCATGGAGATTGGAAAGTCCCTCTTCGACGAGAAGGGATCCGAGTT
GGTCAACGACATAGTCTGCAAGGCGAAGGAGAAGGACGTGAATATACTAT
TTCCGATTGACTTTGTCATAGCCAATAAGATCGACAAGGAGCCGGATAAA
GTGGAACATGTGGATGCCACACAGGGCATACCGGAGGACATGATGGGTCT
GGACCACGGCCAGGCATCCAGTCAGATGTTTGCTGGCGCTATTTGTGCAT
CCAAAACCATCGTCTGGAACGGACCGCCAGGCTTGTTCGAAAACGAGCTA
TTCTCCAAAGGCACCGAGTCCATGCTGGAGGCAGTAATCGGGGCCACTAA
CCGAGGAGCCACCACAATCGTTGGTGGTGGGGATACGGCCACCGCTTGCT
TGAAGTTCGGAGGCGCCGACAAGGTCTCGCATGTGTCCACCGGTGGAGGA
GCTTCCCTGGAGTTGCTGGAGGGTAAGGTTCTGCCTGGAGTGGCTGCCCT
TTCGGATGCCTAAAAGCTTTCTAGACCAT
BS23679.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:19:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9961-RA | 1347 | CG9961-PA | 1..1347 | 17..1363 | 6720 | 99.9 | Plus |
| CG9961-RB | 309 | CG9961-PB | 1..309 | 17..336 | 1400 | 96.6 | Plus |
| Pgk-RE | 1248 | CG3127-PE | 409..783 | 521..895 | 480 | 75.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:19:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9961-RA | 1440 | CG9961-RA | 11..1358 | 17..1364 | 6725 | 99.9 | Plus |
| CG9961-RB | 1429 | CG9961-RB | 11..1347 | 17..1364 | 6525 | 99.1 | Plus |
| Pgk-RE | 1893 | CG3127-RE | 922..1296 | 521..895 | 480 | 75.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:19:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2743457..2744542 | 1364..279 | 5400 | 99.8 | Minus |
| 2L | 23513712 | 2L | 2744767..2744924 | 174..17 | 790 | 100 | Minus |
| 2L | 23513712 | 2L | 2744602..2744714 | 285..173 | 565 | 100 | Minus |
| 2L | 23513712 | 2L | 2747535..2747909 | 895..521 | 480 | 75.2 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:19:49 has no hits.
BS23679.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-07 14:08:45 Download gff for
BS23679.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9961-RA | 11..1355 | 17..1361 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:54:29 Download gff for
BS23679.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9961-RA | 11..1355 | 17..1361 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:57:48 Download gff for
BS23679.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9961-RA | 11..1355 | 17..1361 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:57:48 Download gff for
BS23679.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2743460..2744537 | 284..1361 | 99 | <- | Minus |
| 2L | 2744604..2744712 | 175..283 | 100 | <- | Minus |
| 2L | 2744767..2744924 | 17..174 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:54:29 Download gff for
BS23679.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2743460..2744537 | 284..1361 | 99 | <- | Minus |
| arm_2L | 2744604..2744712 | 175..283 | 100 | <- | Minus |
| arm_2L | 2744767..2744924 | 17..174 | 100 | | Minus |
BS23679.pep Sequence
Translation from 16 to 1362
> BS23679.pep
MLPIRQSLYQRAQTRFTKLRFPRFFSKDDCNGKQVKKLSLKNVDVAGKRV
FMRVDFNVPMKDGKITNNQRIVSALPSIKYALDKKCKSLVLASHLGRPDG
KKNKKFSLEPVAKELESVLGQPVQFLDDCVGDSTLRALKDPSDGTVFLLE
NLRFYAEETGSSKDDNKKKVKADPAKVKEFRAKLAQLGEIYVNDAFGTAH
RPHSSMMGDGYKVRAAGFLLDKELEYFAKVLHDPAKPFLAILGGAKIADK
IPLITNLLNNVTAMIISGGMAFTFLKVLNGMEIGKSLFDEKGSELVNDIV
CKAKEKDVNILFPIDFVIANKIDKEPDKVEHVDATQGIPEDMMGLDHGQA
SSQMFAGAICASKTIVWNGPPGLFENELFSKGTESMLEAVIGATNRGATT
IVGGGDTATACLKFGGADKVSHVSTGGGASLELLEGKVLPGVAALSDA*
BS23679.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:01:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9961-PA | 448 | CG9961-PA | 1..448 | 1..448 | 2289 | 100 | Plus |
| Pgk-PE | 415 | CG3127-PE | 5..415 | 37..448 | 1298 | 62.6 | Plus |
| Pgk-PD | 415 | CG3127-PD | 5..415 | 37..448 | 1298 | 62.6 | Plus |
| Pgk-PC | 415 | CG3127-PC | 5..415 | 37..448 | 1298 | 62.6 | Plus |
| Pgk-PB | 415 | CG3127-PB | 5..415 | 37..448 | 1298 | 62.6 | Plus |
