Clone BS23689 Report

Search the DGRC for BS23689

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:236
Well:89
Vector:pDNR-Dual
Associated Gene/TranscriptCG16852-RA
Protein status:BS23689.pep: gold
Sequenced Size:746

Clone Sequence Records

BS23689.complete Sequence

746 bp assembled on 2011-02-04

GenBank Submission: KX805002

> BS23689.complete
GAAGTTATCAGTCGACATGCTTAGTTCAAAAAGTGACACTTCTGGAGACG
ATATCTCTATAACTGCACAAGCAGAAAAAAGAGTGGATGATAGCATCAGA
GCGCCATCTATTGGCTGGAATGCTGAGCACAAAGATGTTCAGATTCCAAG
GGACCAACTAACCCACAGGCAGATCAGCAAGTGCAATTTGTTTGAGGAAT
ACATCAAGCTCCCAAAGAGTGAATATGGACAAACAAGCCGCATGAAGCGA
TTCCGATCCGAAGAGTTAGCTATTAAGCAAGAAGATCAAATCGTGGAGCA
TAGATCATCGAGTCTTTCGCGGCTATCGGATGTCACAATCAAGCCCACCT
GCGAGGTGAGTAGTCAGACTTCGTGGACAGCAGCGGACGAGAGTAATATG
AATAGCAAGGATTTGGAGGCGAAGCTGGCGGCTGTACGCGGCGGTGGTAT
CGATCTCGAAACGGACAAGCCCAGCAAGATCCAGCAGCACACGATCCACA
TCGAGGTGGAGTCGGTGACATCGGCCACGGCTATGCAAAGACCCCCACTG
CACCAAAGGATGTGGCAGGTCCTTGTGCAGACGGCGGATACGATTGTCGC
ATTCGCCTCTATAATCGGCGAGAATTTAACAGTGGCACTCTTCATTGTCC
TGTGCCTGTGGTGCCTTTACCTCTTACTAAGCCACTTTTATGGCAACTTG
CAGACCAATGTCGGCATGCCGTCCAAATAAAAGCTTTCTAGACCAT

BS23689.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:09:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG16852-RA 714 CG16852-PA 1..714 17..730 3570 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:09:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG16852-RA 835 CG16852-RA 48..763 15..730 3580 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:09:57
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13541124..13541574 280..730 2255 100 Plus
2L 23513712 2L 13540798..13541064 15..281 1335 100 Plus
Blast to na_te.dros performed on 2014-11-26 22:09:58 has no hits.

BS23689.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-04 12:13:27 Download gff for BS23689.complete
Subject Subject Range Query Range Percent Splice Strand
CG16852-RA 50..761 17..728 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:48:56 Download gff for BS23689.complete
Subject Subject Range Query Range Percent Splice Strand
CG16852-RA 50..761 17..728 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:53:07 Download gff for BS23689.complete
Subject Subject Range Query Range Percent Splice Strand
CG16852-RA 50..761 17..728 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:53:07 Download gff for BS23689.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13540800..13541064 17..281 100 -> Plus
2L 13541126..13541572 282..728 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:48:56 Download gff for BS23689.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13540800..13541064 17..281 100 -> Plus
arm_2L 13541126..13541572 282..728 100   Plus

BS23689.pep Sequence

Translation from 16 to 729

> BS23689.pep
MLSSKSDTSGDDISITAQAEKRVDDSIRAPSIGWNAEHKDVQIPRDQLTH
RQISKCNLFEEYIKLPKSEYGQTSRMKRFRSEELAIKQEDQIVEHRSSSL
SRLSDVTIKPTCEVSSQTSWTAADESNMNSKDLEAKLAAVRGGGIDLETD
KPSKIQQHTIHIEVESVTSATAMQRPPLHQRMWQVLVQTADTIVAFASII
GENLTVALFIVLCLWCLYLLLSHFYGNLQTNVGMPSK*

BS23689.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:03:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG16852-PA 237 CG16852-PA 1..237 1..237 1209 100 Plus