Clone BS23690 Report

Search the DGRC for BS23690

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:236
Well:90
Vector:pDNR-Dual
Associated Gene/TranscriptCG2533-RA
Protein status:BS23690.pep: gold
Sequenced Size:575

Clone Sequence Records

BS23690.complete Sequence

575 bp assembled on 2011-01-25

GenBank Submission: KX803168

> BS23690.complete
GAAGTTATCAGTCGACATGTCGCAACTGATGGAGATGACCCGCCACGTGA
CCTCTTGGCTTGGCTGGACACCGACGCCCACATGCGACGTCGCGGAGGAG
GAGGAGCCGCTGCAGGAATCGTCCGGCATTGTGACCGTACTGGTTCTCTA
CCTGGGCATGGCCGGCATCTTTGCGGCCCTGAGTCTCTGCACCACGACCA
GCGACGACCAGGTGCGGGCCCGGGCCAAGCGGGAACTGATGGCCATGGAG
CGCCGCCAGTTGCAGCGTCTGGAGCGGCAGGGCAGGGCAACGGGGTTAAC
TCTGCTGCCAAACTGGACGACCGCCATGCCATCGCTTATTCGCGAAGTGG
CTGCTCCTAGGCCTTCAGTCATTCAACTGGAAGAGCAGCGCTTGCGGATG
CGTCTGCTCCAGCTAACGGATCAGAAGGAGCAGGAGGAGCACGATTCCCA
GGATTGGCACGATGCTGTGGATGCGCCAGAGGAGGAGCAGGCCACCAGTT
GCCTCGCCCCCAAGAGCCAAAATTCCACTTTCTTTGACCTTCCCTTAGAC
TCCGAATGAAAGCTTTCTAGACCAT

BS23690.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:46:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG2533-RA 543 CG2533-PA 1..543 17..559 2715 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:46:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG2533-RA 772 CG2533-RA 136..679 17..560 2720 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:46:17
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11603336..11603879 560..17 2720 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:46:18 has no hits.

BS23690.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:18:02 Download gff for BS23690.complete
Subject Subject Range Query Range Percent Splice Strand
CG2533-RA 136..677 17..558 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:04:27 Download gff for BS23690.complete
Subject Subject Range Query Range Percent Splice Strand
CG2533-RA 136..677 17..558 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:48:47 Download gff for BS23690.complete
Subject Subject Range Query Range Percent Splice Strand
CG2533-RA 136..677 17..558 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:48:47 Download gff for BS23690.complete
Subject Subject Range Query Range Percent Splice Strand
X 11603338..11603879 17..558 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:04:27 Download gff for BS23690.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11497371..11497912 17..558 100   Minus

BS23690.pep Sequence

Translation from 16 to 558

> BS23690.pep
MSQLMEMTRHVTSWLGWTPTPTCDVAEEEEPLQESSGIVTVLVLYLGMAG
IFAALSLCTTTSDDQVRARAKRELMAMERRQLQRLERQGRATGLTLLPNW
TTAMPSLIREVAAPRPSVIQLEEQRLRMRLLQLTDQKEQEEHDSQDWHDA
VDAPEEEQATSCLAPKSQNSTFFDLPLDSE*

BS23690.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:10:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG2533-PA 180 CG2533-PA 1..180 1..180 924 100 Plus