Clone BS23707 Report

Search the DGRC for BS23707

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:237
Well:7
Vector:pDNR-Dual
Associated Gene/TranscriptCG31789-RA
Protein status:BS23707.pep: full length peptide match
Sequenced Size:386

Clone Sequence Records

BS23707.complete Sequence

386 bp assembled on 2011-01-27

GenBank Submission: KX802001

> BS23707.complete
GAAGTTATCAGTCGACATGAAGGCCTTGCAATTCGCTCTTGTATTTTCGG
CCATTCTGGCCATTGCCTTCGCTGCAAATGCCAGTTGGGGAGCCAAATTG
TCCAGCAGTAAGTTGGTCAGCACTCAGAACGTGACCATCTACAAGAAGGC
CAACCAATATGTGAGCAGTCTCATCAGTTTCCCACTGGCGGGCCAGAGCA
ACACTAAAACCATTCGGTACATTAGCATAACTGATAGGTTTACCAACAGT
TCGGGACCTTACTCCACCTTGTGGTCCGGTGGACCAGGATTCATCAATGC
CCAGGTCAATGTCACAAGCCAGTTTTCTCAAGGAATCAATGTAACTGCTC
AATTTTGGGTGGATGCCTAAAAGCTTTCTAGACCAT

BS23707.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:35:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG31789-RC 354 CG31789-PC 1..354 17..370 1770 100 Plus
CG31789-RB 354 CG31789-PB 1..354 17..370 1770 100 Plus
CG31789-RA 354 CG31789-PA 1..354 17..370 1770 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:35:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG31789-RC 695 CG31789-RC 15..369 17..371 1775 100 Plus
CG31789-RB 472 CG31789-RB 15..369 17..371 1775 100 Plus
CG31789-RA 534 CG31789-RA 15..369 17..371 1775 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:35:13
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18606177..18606358 190..371 910 100 Plus
2L 23513712 2L 18605942..18606116 17..191 875 100 Plus
Blast to na_te.dros performed on 2014-11-26 21:35:14 has no hits.

BS23707.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:06:48 Download gff for BS23707.complete
Subject Subject Range Query Range Percent Splice Strand
CG31789-RA 1..352 17..368 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:30:57 Download gff for BS23707.complete
Subject Subject Range Query Range Percent Splice Strand
CG31789-RA 15..366 17..368 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:37:12 Download gff for BS23707.complete
Subject Subject Range Query Range Percent Splice Strand
CG31789-RA 15..366 17..368 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:37:12 Download gff for BS23707.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18605942..18606115 17..190 100 -> Plus
2L 18606178..18606355 191..368 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:30:57 Download gff for BS23707.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18605942..18606115 17..190 100 -> Plus
arm_2L 18606178..18606355 191..368 100   Plus

BS23707.pep Sequence

Translation from 16 to 369

> BS23707.pep
MKALQFALVFSAILAIAFAANASWGAKLSSSKLVSTQNVTIYKKANQYVS
SLISFPLAGQSNTKTIRYISITDRFTNSSGPYSTLWSGGPGFINAQVNVT
SQFSQGINVTAQFWVDA*

BS23707.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:51:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG31789-PC 117 CG31789-PC 1..117 1..117 586 100 Plus
CG31789-PB 117 CG31789-PB 1..117 1..117 586 100 Plus
CG31789-PA 117 CG31789-PA 1..117 1..117 586 100 Plus
CG13323-PB 112 CG13323-PB 1..110 4..114 145 32.5 Plus
CG13323-PA 112 CG13323-PA 1..110 4..114 145 32.5 Plus