Clone BS23710 Report

Search the DGRC for BS23710

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:237
Well:10
Vector:pDNR-Dual
Associated Gene/TranscriptAxs-RB
Protein status:BS23710.pep: full length peptide match
Sequenced Size:800

Clone Sequence Records

BS23710.complete Sequence

800 bp assembled on 2011-02-07

GenBank Submission: KX806247

> BS23710.complete
GAAGTTATCAGTCGACATGTCCGAAGATGCCAAGAGTCCAGGACCACGCA
CACGGAACATCATCGAGAATCAGCTGTTCCGCCGGCAGCGTAGCCTAAAA
TTGGAGGCACTGCAGCGCCAGCGGACCTTGGATTCCAACGATGGGGTGGA
GGGATTGGGCGCAGATACGGAACCCTTCGACAAGACGCACATCGTCATCA
TCTTTACGGAGAAGGCCAAGCTAAGACACTGTCAGGATGTGGAGAAGATC
ATTCAGGAGTTTGGCATCCAGACCACGCTGGAGATCGTAGGGAAAACCGA
AAAGTATCTCTACCTATCGGCCAGCGTGGATACTCTGCTCCGTTTGGCCG
ATGCCGCCGAGCTGGAGAAGATGACCACCACGCACAGCATGCAAAAGTTC
AATCACGGCTGCATCTCGGACTTTCTACTGCCCGGGATGGGCAAAGAGCA
GATCCTGCGCTACTGCGAGATACCTGTTCTCATCAAGGACGTAATCCAGG
ACGGCATTAAGTCCTACGTGCAAAAGGGCTACATAGAGGATATGTTTCCC
CTCCACGATATCCTGTATCTCGAACGCTTCAACTGGAACCTGAAACGCAC
CAAGCTGCCCATCGAGGACATCCGGAACTACTTTGGTTCCAGTATAGGTC
TTTATTTCGGCTTCATCGAGTTCTACACGAAGGCACTGATCTTTCCCTCC
CTTTTTGGTATACTCCAATATGTATTCGATCTGAACATCTCGCTGGTCTG
CAGTTTCTACGTTGTTTGGACCACGGTGAGTTAAAAGCTTTCTAGACCAT

BS23710.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:12:34
Subject Length Description Subject Range Query Range Score Percent Strand
Axs-RA 1941 CG9703-PA 1..759 17..775 3795 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:12:35
Subject Length Description Subject Range Query Range Score Percent Strand
Axs-RA 2575 CG9703-RA 456..1214 17..775 3795 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:12:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16682201..16682472 562..291 1360 100 Minus
X 23542271 X 16681900..16682122 785..563 1115 100 Minus
X 23542271 X 16683209..16683357 184..36 745 100 Minus
X 23542271 X 16683026..16683135 292..183 550 100 Minus
Blast to na_te.dros performed on 2014-11-26 22:12:34 has no hits.

BS23710.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-07 10:59:42 Download gff for BS23710.complete
Subject Subject Range Query Range Percent Splice Strand
Axs-RB 456..1221 17..782 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:50:23 Download gff for BS23710.complete
Subject Subject Range Query Range Percent Splice Strand
Axs-RA 456..1217 17..782 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:54:19 Download gff for BS23710.complete
Subject Subject Range Query Range Percent Splice Strand
Axs-RA 456..1217 17..782 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:54:19 Download gff for BS23710.complete
Subject Subject Range Query Range Percent Splice Strand
X 16681903..16682122 563..782 100 <- Minus
X 16682201..16682471 292..562 100 <- Minus
X 16683027..16683133 185..291 100 <- Minus
X 16683209..16683357 36..184 100 <- Minus
X 16683422..16683440 17..35 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:50:23 Download gff for BS23710.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16575936..16576155 563..782 100 <- Minus
arm_X 16576234..16576504 292..562 100 <- Minus
arm_X 16577060..16577166 185..291 100 <- Minus
arm_X 16577242..16577390 36..184 100 <- Minus
arm_X 16577455..16577473 17..35 100   Minus

BS23710.pep Sequence

Translation from 16 to 783

> BS23710.pep
MSEDAKSPGPRTRNIIENQLFRRQRSLKLEALQRQRTLDSNDGVEGLGAD
TEPFDKTHIVIIFTEKAKLRHCQDVEKIIQEFGIQTTLEIVGKTEKYLYL
SASVDTLLRLADAAELEKMTTTHSMQKFNHGCISDFLLPGMGKEQILRYC
EIPVLIKDVIQDGIKSYVQKGYIEDMFPLHDILYLERFNWNLKRTKLPIE
DIRNYFGSSIGLYFGFIEFYTKALIFPSLFGILQYVFDLNISLVCSFYVV
WTTVS*

BS23710.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:01:34
Subject Length Description Subject Range Query Range Score Percent Strand
Axs-PA 646 CG9703-PA 1..254 1..254 1315 99.6 Plus