BS23738.complete Sequence
983 bp assembled on 2011-02-07
GenBank Submission: KX802403
> BS23738.complete
GAAGTTATCAGTCGACATGGCCCGCATCGTTGAAAGCAATTTTGTGCCAC
TCGCCGTGGGTGTGGTAGCCGTACTCGCCGGCGCCCTGATCGTCCACTAT
CTGCTGAATAAGAAGTCCACGAAACCACGCCGGGAACCCAATCGCACCGC
TCGGCTGCGCACACTTGTGGATCCCAATGACAAGTACCTGCTGCCTCTCA
TCGAAAAGGAGAATCTGAGCCATGACACTAGGAGATTCCGGTTTGGATTG
CCCTCCAAGCAGCATGTCCTTGGCCTGCCCGTTGGCCAGCACATTCATCT
GATCGCCACCATCGACAATGAGCTAATAATTCGGCCATACACTCCGATAT
CGTCTGATGAGGATGTGGGCTACGTGGACCTAGTCGTCAAGGTGTACTTC
AAGGATTCGCATCCCAAGTTCCCGGCCGGCGGCAAAATGACACAACACCT
GGAGCAGCTCGAGTTGGGGGACAAGATCTCGTTCCGTGGTCCCTCGGGTA
GGCTACAATATCTCGGCAATGGCACCTTCTCCATCAAAAAGTTGCGCAAG
GATCCTCCAAAGCACGTGACCGCCAAGCGGGTCAACATGATTGCCGGCGG
CACTGGCATTACTCCAATGCTTCAATTGGCCAGGGAAGTTCTCAAGCGCA
GCGATAAGGATAAGACTGAACTGGCGTTGCTGTTCGCCAATCAGAGCGAA
AAGGACATTCTACTGCGTGCAGAGTTGGACGAACTGGCCCAGAAGCATCC
TGACCAGTTCAAGATCTGGTACACAGTCGACAAGGCAAACGAAGGTTGGC
AGTATAGCGTTGGCTTCATCAATGAGGAAATGATCGCCGCCCACCTGCTT
CCGGCCAAGGACGATACCATTGTGTTGCTTTGCGGCCCACCACCCATGAT
TAACTTTGCCTGCAATCCGGCGCTGGACAAGCTTGGCTACCATCCGGACA
CCCGTTTTGCCTACTAAAAGCTTTCTAGACCAT
BS23738.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:16:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5946-RF | 951 | CG5946-PF | 1..951 | 17..967 | 4740 | 99.9 | Plus |
CG5946-RB | 951 | CG5946-PB | 1..951 | 17..967 | 4740 | 99.9 | Plus |
CG5946-RA | 942 | CG5946-PA | 14..942 | 39..967 | 4630 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:16:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5946-RF | 1460 | CG5946-RF | 348..1299 | 16..967 | 4745 | 99.9 | Plus |
CG5946-RB | 1686 | CG5946-RB | 286..1237 | 16..967 | 4745 | 99.9 | Plus |
CG5946-RA | 1224 | CG5946-RA | 135..1063 | 39..967 | 4630 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:16:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11818254..11818907 | 694..41 | 3270 | 100 | Minus |
3L | 28110227 | 3L | 11817144..11817318 | 967..793 | 860 | 99.4 | Minus |
3L | 28110227 | 3L | 11818086..11818189 | 796..693 | 520 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:16:26 has no hits.
BS23738.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-07 11:56:55 Download gff for
BS23738.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5946-RF | 326..1274 | 17..965 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:52:35 Download gff for
BS23738.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5946-RB | 287..1235 | 17..965 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:56:10 Download gff for
BS23738.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5946-RB | 287..1235 | 17..965 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:56:10 Download gff for
BS23738.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11817146..11817316 | 795..965 | 99 | <- | Minus |
3L | 11818088..11818187 | 695..794 | 100 | <- | Minus |
3L | 11818254..11818907 | 41..694 | 100 | <- | Minus |
3L | 11821834..11821857 | 17..40 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:52:35 Download gff for
BS23738.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11810246..11810416 | 795..965 | 99 | <- | Minus |
arm_3L | 11811188..11811287 | 695..794 | 100 | <- | Minus |
arm_3L | 11811354..11812007 | 41..694 | 100 | <- | Minus |
arm_3L | 11814934..11814957 | 17..40 | 100 | | Minus |
BS23738.pep Sequence
Translation from 16 to 966
> BS23738.pep
MARIVESNFVPLAVGVVAVLAGALIVHYLLNKKSTKPRREPNRTARLRTL
VDPNDKYLLPLIEKENLSHDTRRFRFGLPSKQHVLGLPVGQHIHLIATID
NELIIRPYTPISSDEDVGYVDLVVKVYFKDSHPKFPAGGKMTQHLEQLEL
GDKISFRGPSGRLQYLGNGTFSIKKLRKDPPKHVTAKRVNMIAGGTGITP
MLQLAREVLKRSDKDKTELALLFANQSEKDILLRAELDELAQKHPDQFKI
WYTVDKANEGWQYSVGFINEEMIAAHLLPAKDDTIVLLCGPPPMINFACN
PALDKLGYHPDTRFAY*
BS23738.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:03:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5946-PF | 316 | CG5946-PF | 1..316 | 1..316 | 1648 | 100 | Plus |
CG5946-PB | 316 | CG5946-PB | 1..316 | 1..316 | 1648 | 100 | Plus |
CG5946-PA | 313 | CG5946-PA | 1..313 | 4..316 | 1616 | 98.7 | Plus |
CG5946-PD | 316 | CG5946-PD | 1..316 | 1..316 | 1513 | 90.5 | Plus |
CG5946-PG | 330 | CG5946-PG | 1..330 | 1..316 | 1488 | 86.7 | Plus |