BS23764.complete Sequence
824 bp assembled on 2011-02-07
GenBank Submission: KX803711
> BS23764.complete
GAAGTTATCAGTCGACATGGATTTCAACAAGCGACAGAACATGGAGGAGG
TGGTGCGCATCGGAGGCAAAGGATCTATGCGCCGCAAGCATAAGAGAATC
CCATCAGTAGCTGCGGTCGATGAGAAGCGCGTGCAGGCGACATTGGCCAA
GATACCGTTAAAGAATATCAGCGGAATCCATGAGTTGACCATCGAGTTCA
CCGATTCCAGTGAGGTTGTGGTAGTCATGCCCAAGGTTCAGGGCATCTCT
GCCAATGGTTTGTTAGTTGTTAATGGCGATTTCGTGCGCAAATCGTCAAC
AGCTGGCCCATCGAAAATGGCCAAAGCAGCCAAGGCACCCAAGGCACCCA
AGGCACCCAAGGCACCCAAGACACCCATGGCACCCATGGCACCCATGGCA
CCCATGGCACCCATGACACCCAAGCCGGAAGCTTTTTCCGTCAAAAAGCC
AGAATCAGAGGAAACCATTAAGGTGGTGGCCAAGAAGCCCAAGAAGCTGC
GCAATCGTGTTCGTCCTCGCAACAAGAAGGTCCAAATGATGCTCTCTAAA
AACAATGAGGAAGCAGCCATGGCTGGCGGGGATTCGGAGCCGAAGCTTAG
CAATGGTAAATCAATTTTGATCTCCTCTGAAGATGGTAGCGATCCGGATA
ATGAGAAGGTGCCATCGGATGAGTCTGATGTGGATCGGACCGTCGTCTGC
GACAAAGATTCGCTGGGAAGTTTCGGCGATGATTCCGACGGCAAGGAGGA
CGATGACAGTAAGGAGTCGATTTACCTATCTTTCTACTCCGATGGCTATG
ATTCCTAGAAGCTTTCTAGACCAT
BS23764.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:12:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| betaNACtes4-RA | 792 | CG18313-PA | 1..792 | 17..808 | 3960 | 100 | Plus |
| betaNACtes3-RA | 789 | CG32601-PA | 302..729 | 375..805 | 1700 | 93.5 | Plus |
| betaNACtes6-RA | 789 | CG32598-PA | 302..729 | 375..805 | 1655 | 92.8 | Plus |
| betaNACtes3-RA | 789 | CG32601-PA | 1..351 | 17..370 | 850 | 83.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:12:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| betaNACtes4-RA | 1012 | CG18313-RA | 103..894 | 17..808 | 3960 | 100 | Plus |
| betaNACtes3-RA | 967 | CG32601-RA | 419..846 | 375..805 | 1700 | 93.5 | Plus |
| betaNACtes6-RA | 967 | CG32598-RA | 419..846 | 375..805 | 1655 | 92.8 | Plus |
| betaNACtes3-RA | 967 | CG32601-RA | 118..468 | 17..370 | 850 | 83.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:12:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14380507..14381298 | 17..808 | 3960 | 100 | Plus |
| X | 23542271 | X | 14379278..14379705 | 375..805 | 1700 | 93.5 | Plus |
| X | 23542271 | X | 14316251..14316678 | 805..375 | 1655 | 92.8 | Minus |
| X | 23542271 | X | 14171744..14172169 | 803..375 | 1555 | 91.4 | Minus |
| X | 23542271 | X | 14314762..14315019 | 805..548 | 1110 | 95.3 | Minus |
| X | 23542271 | X | 14172120..14172470 | 370..17 | 955 | 85.3 | Minus |
| X | 23542271 | X | 14316629..14316979 | 370..17 | 850 | 83.3 | Minus |
| X | 23542271 | X | 14378977..14379327 | 17..370 | 850 | 83.3 | Plus |
| X | 23542271 | X | 14315113..14315412 | 316..17 | 675 | 81.7 | Minus |
| X | 23542271 | X | 15576746..15576921 | 567..744 | 415 | 84.2 | Plus |
| X | 23542271 | X | 14315018..14315112 | 492..398 | 265 | 85.3 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:12:12 has no hits.
BS23764.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-07 10:59:41 Download gff for
BS23764.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18313-RA | 103..894 | 17..808 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:50:14 Download gff for
BS23764.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaNACtes4-RA | 103..894 | 17..808 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:54:11 Download gff for
BS23764.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaNACtes4-RA | 103..894 | 17..808 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:54:11 Download gff for
BS23764.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14380507..14381298 | 17..808 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:50:14 Download gff for
BS23764.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14274540..14275331 | 17..808 | 100 | | Plus |
BS23764.pep Sequence
Translation from 16 to 807
> BS23764.pep
MDFNKRQNMEEVVRIGGKGSMRRKHKRIPSVAAVDEKRVQATLAKIPLKN
ISGIHELTIEFTDSSEVVVVMPKVQGISANGLLVVNGDFVRKSSTAGPSK
MAKAAKAPKAPKAPKAPKTPMAPMAPMAPMAPMTPKPEAFSVKKPESEET
IKVVAKKPKKLRNRVRPRNKKVQMMLSKNNEEAAMAGGDSEPKLSNGKSI
LISSEDGSDPDNEKVPSDESDVDRTVVCDKDSLGSFGDDSDGKEDDDSKE
SIYLSFYSDGYDS*
BS23764.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:01:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| betaNACtes4-PA | 263 | CG18313-PA | 1..263 | 1..263 | 1333 | 100 | Plus |
| betaNACtes3-PA | 262 | CG32601-PA | 1..243 | 1..263 | 945 | 76.4 | Plus |
| betaNACtes1-PA | 261 | CG13402-PA | 1..241 | 1..261 | 932 | 75.1 | Plus |
| betaNACtes6-PA | 262 | CG32598-PA | 1..243 | 1..263 | 921 | 75.3 | Plus |
| betaNACtes2-PA | 197 | CG18157-PA | 1..197 | 1..243 | 666 | 60.9 | Plus |
