BS23781.complete Sequence
614 bp assembled on 2011-01-27
GenBank Submission: KX805470
> BS23781.complete
GAAGTTATCAGTCGACATGTCCGCCCTGTCCGCGCCCACCACATGTGGCT
GCTCGCCTGTCCACTGGGCCATTGTCATTGTGCTCCTGTCAGTGGCGATT
GGACCGGGAGACGCCATGGCCCGTCCAGCGCGCAACACGCAGTTGTTGTT
CAGCGAGCTCTTGGGGGGCGGAAACGATGATAACAACTACTACGGCGACC
AGTTGAAGTACCAGCAACAGCAACAGCAACAGCAGGAACAGAAGCAGCAG
CGGGTGCCGGCTTTCGCCAGGAAGTGGCCCTCGCTGAGGGATCTGTTGCT
CACCGTGGACTACGATGACTTCGGGGTTACCCAGGAGAGCGAGGAGCAGG
TGGCGCCCAGTTCCCGCCTGCTGGCTCGACTGCACAGGCTCGGCGATAAT
GGAGGCGGCGAGGAGCTGCGGTACAACGTCGTTAACGAACTGACCAATAT
GCCCAGCAAGAAGGTGATGCCAGGACATCCCCTCAAGGATCACAACACCA
AGAAGAACGTTCAGTTTCGTAAACAATATATGTCGCCTTGCCACTTCAAG
ATCTGCAACATGGGACGCAAACGCAACGCTGGCTTCAATTCCTACTGAAA
GCTTTCTAGACCAT
BS23781.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:58:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CNMa-RB | 582 | CG13936-PB | 1..582 | 17..598 | 2910 | 100 | Plus |
| CNMa-RC | 582 | CG13936-PC | 1..582 | 17..598 | 2910 | 100 | Plus |
| CNMa-RD | 570 | CG13936-PD | 1..570 | 17..598 | 2695 | 97.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:58:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CNMa-RB | 1261 | CG13936-RB | 604..1186 | 17..599 | 2915 | 100 | Plus |
| CNMa-RC | 1900 | CG13936-RC | 886..1468 | 17..599 | 2915 | 100 | Plus |
| CNMa-RD | 1606 | CG13936-RD | 604..1174 | 17..599 | 2700 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:58:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1851662..1851972 | 515..205 | 1555 | 100 | Minus |
| 3L | 28110227 | 3L | 1852052..1852240 | 205..17 | 945 | 100 | Minus |
| 3L | 28110227 | 3L | 1851347..1851418 | 599..528 | 360 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:58:04 has no hits.
BS23781.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:06:41 Download gff for
BS23781.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13936-RB | 604..1184 | 17..597 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:14:19 Download gff for
BS23781.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13936-RC | 886..1466 | 17..597 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:31:49 Download gff for
BS23781.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CNMa-RC | 886..1466 | 17..597 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:31:49 Download gff for
BS23781.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1852052..1852240 | 17..205 | 100 | | Minus |
| 3L | 1851664..1851971 | 206..513 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:14:19 Download gff for
BS23781.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1851664..1851971 | 206..513 | 100 | <- | Minus |
| arm_3L | 1852052..1852240 | 17..205 | 100 | | Minus |
BS23781.pep Sequence
Translation from 16 to 597
> BS23781.pep
MSALSAPTTCGCSPVHWAIVIVLLSVAIGPGDAMARPARNTQLLFSELLG
GGNDDNNYYGDQLKYQQQQQQQQEQKQQRVPAFARKWPSLRDLLLTVDYD
DFGVTQESEEQVAPSSRLLARLHRLGDNGGGEELRYNVVNELTNMPSKKV
MPGHPLKDHNTKKNVQFRKQYMSPCHFKICNMGRKRNAGFNSY*
BS23781.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:58:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CNMa-PB | 193 | CG13936-PB | 1..193 | 1..193 | 1029 | 100 | Plus |
| CNMa-PC | 193 | CG13936-PC | 1..193 | 1..193 | 1029 | 100 | Plus |
| CNMa-PD | 189 | CG13936-PD | 1..189 | 1..193 | 993 | 97.9 | Plus |
