Clone BS23782 Report

Search the DGRC for BS23782

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:237
Well:82
Vector:pDNR-Dual
Associated Gene/TranscriptAlr-RB
Protein status:BS23782.pep: full length peptide match
Sequenced Size:833

Clone Sequence Records

BS23782.complete Sequence

833 bp assembled on 2011-02-04

GenBank Submission: KX800380

> BS23782.complete
GAAGTTATCAGTCGACATGCGCATGCTTTTTATGATTTTCACAATAGCCG
AGCGAAGTTTCAAGATTCTAGAACTACCCACCACACCAACGCTTCTGCTG
CGCCGCCAGTCCCACAACTACGGCTACGACTACATCAGCCCCACGCACAT
CGAACTCAGCCGGGAAGCAACTCGCCTGGTAATTCGCCGTCTGCAGCGCA
CCGTTCTCCGCCTGATCCGTGACCCGGACTTCATCATGTCTGCCGAGGCG
AATCCCGAGATGGATAAGGAGCACCACGAGTCCCCATTCGCAGCGAACCG
CAAGGCCGGTGCCAGCGGCGCCGGCAAACAGGACTCGAACTGCCGCACCT
GCAACGATTTCAAGTCGTGGTCCAAGCAGCAACGCCTCATCTCCAACGTG
CAGAGCGCCAAGGTGAAGCACATGGCCGCCGCCGAAAAGCTGACCGTCAA
CGCCGCCGAAGATCCGCTGCCCCGCGACGACTGCCCGCTGGACAAGGTGA
GGCTGGGAATTTCCACCTGGGGACTGCTCCACACCATGGCCGCCTTTTAC
TCGGACAACCCCACGGACACCGAGAAGCGCGACATGAAGACCTTTTTTGA
GGTTCTGTCGCGCCTTTACCCCTGCGAGTTTTGCGCCAAGGACTTTCGCA
CCGACCTGGACGTCAACCCCATCAATGTGAACTCCCAAAAGGAGCTAGCA
CTGTGGCTGTGCAAGTTCCACAACCGAGTGAACGACAAACTGGGCAAACC
GCTCTTCGATTGCACCAAGGTGAACGAGAGGTGGCGCGACGGCTGGCTAG
ACGGCTCCTGCGACTAGAAGCTTTCTAGACCAT

BS23782.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:12:07
Subject Length Description Subject Range Query Range Score Percent Strand
Alr-RB 801 CG12534-PB 1..801 17..817 4005 100 Plus
Alr-RA 786 CG12534-PA 1..786 32..817 3930 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:12:09
Subject Length Description Subject Range Query Range Score Percent Strand
Alr-RB 1362 CG12534-RB 245..1046 16..817 4010 100 Plus
Alr-RA 1107 CG12534-RA 1..791 27..817 3955 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:12:06
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19748912..19749312 16..416 2005 100 Plus
X 23542271 X 19749386..19749629 411..654 1220 100 Plus
X 23542271 X 19749689..19749851 655..817 815 100 Plus
Blast to na_te.dros performed on 2014-11-27 01:12:06 has no hits.

BS23782.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-14 14:32:43 Download gff for BS23782.complete
Subject Subject Range Query Range Percent Splice Strand
Alr-RA 1..795 23..817 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:47:52 Download gff for BS23782.complete
Subject Subject Range Query Range Percent Splice Strand
Alr-RB 176..976 17..817 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:20:39 Download gff for BS23782.complete
Subject Subject Range Query Range Percent Splice Strand
Alr-RB 246..1046 17..817 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:20:39 Download gff for BS23782.complete
Subject Subject Range Query Range Percent Splice Strand
X 19748913..19749308 17..412 100 -> Plus
X 19749388..19749629 413..654 100 -> Plus
X 19749689..19749851 655..817 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:47:52 Download gff for BS23782.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19643421..19643662 413..654 100 -> Plus
arm_X 19643722..19643884 655..817 100   Plus
arm_X 19642946..19643341 17..412 100 -> Plus

BS23782.pep Sequence

Translation from 16 to 816

> BS23782.pep
MRMLFMIFTIAERSFKILELPTTPTLLLRRQSHNYGYDYISPTHIELSRE
ATRLVIRRLQRTVLRLIRDPDFIMSAEANPEMDKEHHESPFAANRKAGAS
GAGKQDSNCRTCNDFKSWSKQQRLISNVQSAKVKHMAAAEKLTVNAAEDP
LPRDDCPLDKVRLGISTWGLLHTMAAFYSDNPTDTEKRDMKTFFEVLSRL
YPCEFCAKDFRTDLDVNPINVNSQKELALWLCKFHNRVNDKLGKPLFDCT
KVNERWRDGWLDGSCD*

BS23782.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:07:31
Subject Length Description Subject Range Query Range Score Percent Strand
Alr-PB 266 CG12534-PB 1..266 1..266 1421 100 Plus
Alr-PA 261 CG12534-PA 1..261 6..266 1396 100 Plus