Clone BS23785 Report

Search the DGRC for BS23785

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:237
Well:85
Vector:pDNR-Dual
Associated Gene/TranscriptRpp20-RA
Protein status:BS23785.pep: gold
Sequenced Size:536

Clone Sequence Records

BS23785.complete Sequence

536 bp assembled on 2011-01-27

GenBank Submission: KX802787

> BS23785.complete
GAAGTTATCAGTCGACATGATGGGAAGCAATTATCCCGAGCACGGGACCA
AGCCGAGATCCGCCAAATACCACAAACAACAGAACCACCGAGTGGTGCGC
AAGCAGCCGCCGCGTCCCGCTGTTAGCGACCGCCACAACATCTACATCAC
CAGCAAGACAGACTTTAAGGCCCAGCAGCGCCGCTGCGAGGAGCTGATTA
ACTCCGGCGCCCACGAGATCTTTCTGCATTGCATGGGCTTCTCCGTAACC
CGCGGCCTCAATATCGCCCTACGCCTCGTCCAGAATTCTGACGGCGCCCT
TAGCTACGCCATCAACACCTCCACCGTTCAGCTGGTGGACGAACTGCACC
CGCTGTGCGATGCCGAGGACATAACCTTCCGCCAGCGCAACAACTCGGCC
CTGCACATCAAGATCCTCAATAACAGTCTCTTCGACATCGCCGTGCCGCA
ACCGTCGCAGTCCCAGACGCAAGCCCAGTCCCTGGGCCAGTTCCGAGGCA
AGGCGAAGGCCAGGCAGTAGAAGCTTTCTAGACCAT

BS23785.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:58:32
Subject Length Description Subject Range Query Range Score Percent Strand
Rpp20-RB 504 CG33931-PB 1..504 17..520 2520 100 Plus
Rpp20-RA 504 CG33931-PA 1..504 17..520 2520 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:58:33
Subject Length Description Subject Range Query Range Score Percent Strand
Rpp20-RB 1395 CG33931-RB 99..602 17..520 2520 100 Plus
Rpp20-RA 1244 CG33931-RA 99..602 17..520 2520 100 Plus
CG33932-RB 1395 CG33932-RB 99..602 17..520 2520 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:58:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19744753..19745105 168..520 1765 100 Plus
X 23542271 X 19744529..19744683 17..171 775 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:58:31 has no hits.

BS23785.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:06:41 Download gff for BS23785.complete
Subject Subject Range Query Range Percent Splice Strand
CG33932-RA 97..600 17..520 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:14:37 Download gff for BS23785.complete
Subject Subject Range Query Range Percent Splice Strand
Rpp20-RA 99..602 17..520 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:32:05 Download gff for BS23785.complete
Subject Subject Range Query Range Percent Splice Strand
CG33932-RB 99..602 17..520 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:32:05 Download gff for BS23785.complete
Subject Subject Range Query Range Percent Splice Strand
X 19744529..19744685 17..175 98 -> Plus
X 19744761..19745105 176..520 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:14:37 Download gff for BS23785.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19638562..19638718 17..175 98 -> Plus
arm_X 19638794..19639138 176..520 100   Plus

BS23785.pep Sequence

Translation from 16 to 519

> BS23785.pep
MMGSNYPEHGTKPRSAKYHKQQNHRVVRKQPPRPAVSDRHNIYITSKTDF
KAQQRRCEELINSGAHEIFLHCMGFSVTRGLNIALRLVQNSDGALSYAIN
TSTVQLVDELHPLCDAEDITFRQRNNSALHIKILNNSLFDIAVPQPSQSQ
TQAQSLGQFRGKAKARQ*

BS23785.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:58:11
Subject Length Description Subject Range Query Range Score Percent Strand
Rpp20-PB 167 CG33931-PB 1..167 1..167 869 100 Plus
Rpp20-PA 167 CG33931-PA 1..167 1..167 869 100 Plus