Clone BS23788 Report

Search the DGRC for BS23788

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:237
Well:88
Vector:pDNR-Dual
Associated Gene/TranscriptMED18-RA
Protein status:BS23788.pep: full length peptide match
Sequenced Size:686

Clone Sequence Records

BS23788.complete Sequence

686 bp assembled on 2011-01-27

GenBank Submission: KX803022

> BS23788.complete
GAAGTTATCAGTCGACATGGCGATTGTGTCGTCGGCCCGTGAGTCGCTCT
CCCATGCGATGAACAACCGCTTCTTGCCCAACCTGGAGTACTTGCTGCAG
GGATCTATCCTGGATTCCGCCGTGGAACACTTGATGCACAGACTAAAGGG
ACTCTGCGACAATGTGGACACCTCGCCGGAGCCGTTTCACGATCTGGAAG
TGTGTATGAGCCTTCGCCAGCCCAATGCCAACCAGCCGCTGCTTCTTCGC
GTGCGCCGAGCCCTTGGTCGCGATGCACCCTTTCAGATGCGCTACCTAGG
AAACCCCGAGGTGGATCTGCGCCGGCCTACATTGGTACGCAGCTGCATGG
ACTGCGCCTGCACCAATGGCATTTTGGAATTCCTCACGGAAATGGGCTTC
CGCCTGGAGTTCGAGTACATAGCAAAGGGCTATATGTTCCGCAAGGGGCG
CATGAAGATTACCGTCTCCAAGCTCATTAAGATTGTGCCCGGCAAGCAGC
AGGACATGGCCAACGAGCCAATCTCACAAAGCTACATAGTGGAACTCTCT
GTGGTGGCGCCAACGGGGCAGGAGAATGTCGGCGAGGAAATGCGCGTGTT
TGCCGAGCAACTAAAGCCACTCGTGCAGCTCGAGAAGATCGACTACAAGC
GACTGGGCGGCATGCCGTAGAAGCTTTCTAGACCAT

BS23788.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:58:56
Subject Length Description Subject Range Query Range Score Percent Strand
MED18-RA 654 CG14802-PA 1..654 17..670 3270 100 Plus
MED18-RC 153 CG14802-PC 1..130 17..146 635 99.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:58:57
Subject Length Description Subject Range Query Range Score Percent Strand
MED18-RA 842 CG14802-RA 106..759 17..670 3270 100 Plus
MED18-RC 865 CG14802-RC 251..782 139..670 2660 100 Plus
MED18-RC 865 CG14802-RC 106..235 17..146 635 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:58:54
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1866206..1866496 139..429 1455 100 Plus
X 23542271 X 1866562..1866804 428..670 1215 100 Plus
X 23542271 X 1866014..1866138 17..141 625 100 Plus
Blast to na_te.dros performed 2014-11-26 16:58:55
Subject Length Description Subject Range Query Range Score Percent Strand
412 7567 412 412 7567bp 2351..2412 248..187 112 64.5 Minus

BS23788.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:06:42 Download gff for BS23788.complete
Subject Subject Range Query Range Percent Splice Strand
MED18-RA 106..759 17..670 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:14:45 Download gff for BS23788.complete
Subject Subject Range Query Range Percent Splice Strand
MED18-RA 106..759 17..670 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:32:16 Download gff for BS23788.complete
Subject Subject Range Query Range Percent Splice Strand
MED18-RA 106..759 17..670 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:32:16 Download gff for BS23788.complete
Subject Subject Range Query Range Percent Splice Strand
X 1866209..1866495 142..428 100 -> Plus
X 1866563..1866804 429..670 100   Plus
X 1866014..1866138 17..141 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:14:45 Download gff for BS23788.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 1760242..1760528 142..428 100 -> Plus
arm_X 1760596..1760837 429..670 100   Plus
arm_X 1760047..1760171 17..141 100 -> Plus

BS23788.pep Sequence

Translation from 16 to 669

> BS23788.pep
MAIVSSARESLSHAMNNRFLPNLEYLLQGSILDSAVEHLMHRLKGLCDNV
DTSPEPFHDLEVCMSLRQPNANQPLLLRVRRALGRDAPFQMRYLGNPEVD
LRRPTLVRSCMDCACTNGILEFLTEMGFRLEFEYIAKGYMFRKGRMKITV
SKLIKIVPGKQQDMANEPISQSYIVELSVVAPTGQENVGEEMRVFAEQLK
PLVQLEKIDYKRLGGMP*

BS23788.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:58:13
Subject Length Description Subject Range Query Range Score Percent Strand
MED18-PA 217 CG14802-PA 1..217 1..217 1118 100 Plus
MED18-PC 50 CG14802-PC 1..43 1..43 206 97.7 Plus