Clone BS23789 Report

Search the DGRC for BS23789

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:237
Well:89
Vector:pDNR-Dual
Associated Gene/TranscriptRpII15-RA
Protein status:BS23789.pep: gold
Sequenced Size:422

Clone Sequence Records

BS23789.complete Sequence

422 bp assembled on 2011-01-27

GenBank Submission: KX805815

> BS23789.complete
GAAGTTATCAGTCGACATGACGACTGCCTTTGATGCCGCACACACTGAGG
GGCCGGGATTCGTGGGCATTCGGTTCTGCCAGGAGTGCAACAACATGCTG
TACCCCAAGGAGGACAAGGAGAACAAGATCCTGCTGTACGCCTGCCGGAA
TTGCGATTACAAACAGGAGGCGGACTCCAACTGCATCTACGTGAACAAGA
TTATGCACGAGATCGACGAGCTGACCCACATTGTGCCCGACGTGATTTCC
GATCCCACGCTGCCGCGCACCGAAGACCACGCTTGTCCCAAGTGCTCCCA
TCGGGAGGCGGTCTTCTTCCAGGCGCAAACTCGTCGCGCCGAAGAGGAGA
TGCGACTGTACTACGTGTGCACCAACCAGAACTGCACCCACCGTTGGACG
GAGTAGAAGCTTTCTAGACCAT

BS23789.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:59:04
Subject Length Description Subject Range Query Range Score Percent Strand
RpII15-RC 390 CG3284-PC 1..390 17..406 1950 100 Plus
RpII15-RB 390 CG3284-PB 1..390 17..406 1950 100 Plus
RpII15-RA 390 CG3284-PA 1..390 17..406 1950 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:59:06
Subject Length Description Subject Range Query Range Score Percent Strand
RpII15-RC 1035 CG3284-RC 43..435 16..408 1965 100 Plus
RpII15-RB 694 CG3284-RB 36..428 16..408 1965 100 Plus
RpII15-RA 701 CG3284-RA 43..435 16..408 1965 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:59:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14309186..14309578 16..408 1965 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:59:04 has no hits.

BS23789.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:06:42 Download gff for BS23789.complete
Subject Subject Range Query Range Percent Splice Strand
RpII15-RA 39..428 17..406 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:14:49 Download gff for BS23789.complete
Subject Subject Range Query Range Percent Splice Strand
RpII15-RA 58..447 17..406 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:32:21 Download gff for BS23789.complete
Subject Subject Range Query Range Percent Splice Strand
RpII15-RA 44..433 17..406 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:32:21 Download gff for BS23789.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14309187..14309576 17..406 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:14:49 Download gff for BS23789.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10134909..10135298 17..406 100   Plus

BS23789.pep Sequence

Translation from 16 to 405

> BS23789.pep
MTTAFDAAHTEGPGFVGIRFCQECNNMLYPKEDKENKILLYACRNCDYKQ
EADSNCIYVNKIMHEIDELTHIVPDVISDPTLPRTEDHACPKCSHREAVF
FQAQTRRAEEEMRLYYVCTNQNCTHRWTE*

BS23789.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:58:14
Subject Length Description Subject Range Query Range Score Percent Strand
RpII15-PC 129 CG3284-PC 1..129 1..129 722 100 Plus
RpII15-PB 129 CG3284-PB 1..129 1..129 722 100 Plus
RpII15-PA 129 CG3284-PA 1..129 1..129 722 100 Plus
CG33785-PA 108 CG33785-PA 4..108 20..129 157 30.9 Plus