BS23789.complete Sequence
422 bp assembled on 2011-01-27
GenBank Submission: KX805815
> BS23789.complete
GAAGTTATCAGTCGACATGACGACTGCCTTTGATGCCGCACACACTGAGG
GGCCGGGATTCGTGGGCATTCGGTTCTGCCAGGAGTGCAACAACATGCTG
TACCCCAAGGAGGACAAGGAGAACAAGATCCTGCTGTACGCCTGCCGGAA
TTGCGATTACAAACAGGAGGCGGACTCCAACTGCATCTACGTGAACAAGA
TTATGCACGAGATCGACGAGCTGACCCACATTGTGCCCGACGTGATTTCC
GATCCCACGCTGCCGCGCACCGAAGACCACGCTTGTCCCAAGTGCTCCCA
TCGGGAGGCGGTCTTCTTCCAGGCGCAAACTCGTCGCGCCGAAGAGGAGA
TGCGACTGTACTACGTGTGCACCAACCAGAACTGCACCCACCGTTGGACG
GAGTAGAAGCTTTCTAGACCAT
BS23789.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:59:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpII15-RC | 390 | CG3284-PC | 1..390 | 17..406 | 1950 | 100 | Plus |
RpII15-RB | 390 | CG3284-PB | 1..390 | 17..406 | 1950 | 100 | Plus |
RpII15-RA | 390 | CG3284-PA | 1..390 | 17..406 | 1950 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:59:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpII15-RC | 1035 | CG3284-RC | 43..435 | 16..408 | 1965 | 100 | Plus |
RpII15-RB | 694 | CG3284-RB | 36..428 | 16..408 | 1965 | 100 | Plus |
RpII15-RA | 701 | CG3284-RA | 43..435 | 16..408 | 1965 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:59:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14309186..14309578 | 16..408 | 1965 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:59:04 has no hits.
BS23789.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:06:42 Download gff for
BS23789.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpII15-RA | 39..428 | 17..406 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:14:49 Download gff for
BS23789.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpII15-RA | 58..447 | 17..406 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:32:21 Download gff for
BS23789.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpII15-RA | 44..433 | 17..406 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:32:21 Download gff for
BS23789.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14309187..14309576 | 17..406 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:14:49 Download gff for
BS23789.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10134909..10135298 | 17..406 | 100 | | Plus |
BS23789.pep Sequence
Translation from 16 to 405
> BS23789.pep
MTTAFDAAHTEGPGFVGIRFCQECNNMLYPKEDKENKILLYACRNCDYKQ
EADSNCIYVNKIMHEIDELTHIVPDVISDPTLPRTEDHACPKCSHREAVF
FQAQTRRAEEEMRLYYVCTNQNCTHRWTE*
BS23789.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:58:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpII15-PC | 129 | CG3284-PC | 1..129 | 1..129 | 722 | 100 | Plus |
RpII15-PB | 129 | CG3284-PB | 1..129 | 1..129 | 722 | 100 | Plus |
RpII15-PA | 129 | CG3284-PA | 1..129 | 1..129 | 722 | 100 | Plus |
CG33785-PA | 108 | CG33785-PA | 4..108 | 20..129 | 157 | 30.9 | Plus |