BS23791.complete Sequence
2162 bp assembled on 2011-02-15
GenBank Submission: KX804538
> BS23791.complete
GAAGTTATCAGTCGACATGAGCGAAGGGGTACCAGCGTCGCCCGTGGCCA
TTGGCGAACTCAAGTACGAGGATGTGTCGCAGCTAAATTTTTCCAAACTG
TACTCGCCCAAGATGAAAAGCGTATACTGGCGCTACTTTGGATTCCCCTC
GAACGACAATAATGAGGTGATTACCAAACAGAATGTGGTCTGCATTAAGT
GTCACAAGGTGCTGACCAACCATGGCAACACCACCAATTTGCGTGCGCAT
CTCCAGCACCGACACAAGGATCTGTTCAAGGAGCTGTGCCAGGAGCACGA
CATCCATGTGCCGCCGCGCAAGACGCCGCGTAATGTATCCCATCCACCGC
TGTCCAAGCGGAATGTTTCCTCGCGGCGGGTCAAACTGGAGTTCATTAAT
AACCGGAACCACGATAACGCTTCCGATGATGAACTGGACGAAGCAGCCGT
GGCAACTGCGGCCATGCAGGCGGAGGAGGACGCCTCCTCGCAAACCATGC
TGTACGAGACCATGGTGCCCTTCACCTACGACGAGGCCGAAAATCTGGTA
GAGGAGGAGGAGCGCCTAGTTATGGAACCAAAGTACGGACGCAAACGCAA
AGTGGCCACTCCATCGAGTGCCCTGATGCACGGGCGTGTCATCAAGCACG
AGGAAGGCGGCTATGCCGCCGTGGCGAACATCGCCAATCTGGCCGAAGCC
CTTACGGACATTGTGATTAAGGATTTGCGCAATGTGGATTCTCTGTACGA
TGCCGGTTTTGGTGAATTCCTGCGTCAAGTCCTAGGCAATTCGGCAGCCA
TGCCCGAGCCACACAAGATCGACTCTTTGATCAATGAGATGCACGCCTCC
AAGTTTCTGGAGATTGGCGAAATCACGCGCGATTTCACCTCCGAGAAGCC
CTTCTCTCTCGCCTTTGAGATGTGGGTGAATGTTGAACAGCGGCGCTTCC
TTAGCATCTTCCATCACTTTCTGGACGAGGAGACGCACTCAGTTCGCGGT
ATGCTGTATGCCACCGTGGAGTACAACGACTACATCGTCTTTGACGATCT
GCTGACCGACTTCTATTTGGCCAATTGCACACTGGCCATCATAAACTACG
ACGAGGAAGAGGACCTTTTGCACACCTATCTGCGAGAGAAAAATATACCC
ATTTCGCTGTGCTACGTTTCGGTAATTGACAAATGTTTGCGTCGTGTGTT
TGAGATCGAAGAGGTGGCCACTTTATTGGAGCAGGTGAAGGACCTAATGC
AGCGTCATTCAACGGAGATTGCCTCCAAGGTGTCCGAGGTGCCCATGCCC
ACGTACAACGAGCACTTCCCCTGGACACTGTACGAAACATTGAAGTTCTT
TGCCGAGTCCATATCTTGGTCCGAGGACATGGATCACCTGGTTATATCAG
CCAAGACGGTGACGGAGGCCCTGAGTGCTCTGGTGATTGCTTTGGACACG
CTGCGTGGCGAAGACATTCCCTTGTGTAGCATGCTTTCGCCAATCACTTC
AAAGATTCTTATCAAGAAGTTGGGCATCGCCGAGCAGGACGATCCCCTAA
TGATGAATTTGAAGCGGACCATTTCCAGTGTCCTCCAGGCGCACGTTATA
TCCAATGACAATCTGACCGCTGCTGCATTGTTGGACCCACGCTTCCACCG
CCTGACCACCATTGACAACCTAGAGCGAACCGTTCGTATGCTGACCCATA
AGTATAACATTAACTTTGGTGGAGTGGGCGAAGGGGAATCCAACGAAGTG
GCAGCTACCTCCAGCGTGGTGGCCATTAAGTCAGAACCAAGAGTAGTGGA
CGGCAGTGCACCAAAGAAGTTGGGTCTGAAACTGCTGTTTGACAGTAACG
AGATACCAAATCCTCCGAAGCGAGATGCGGACAGCAGCGTGGAGTCCGAT
CTTAAGCGATATCGCAACGAGGTGGTCGTTCAGCTGGATGAGTCGCCCAT
CGAGTGGTGGCTCAAGATGGGACACATTTATGGAACGCTCCGCGATTTGG
CCAGCCTGTACCATAGTGTGCCCGGCGTGGTGACGCTCAGCTTCAAGAAG
GCGCTGAGAGACCAAATATACGACTTCAACAAGCGATTCATGCTCACCGG
TAGTCACATCGACGCCATCCTCTTTCTTCATCATCACAACAATTAGAAGC
TTTCTAGACCAT
BS23791.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:56:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dref-RB | 2130 | CG5838-PB | 1..2130 | 17..2146 | 10650 | 100 | Plus |
| Dref-RA | 2130 | CG5838-PA | 1..2130 | 17..2146 | 10650 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:56:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dref-RB | 2739 | CG5838-RB | 345..2474 | 17..2146 | 10650 | 100 | Plus |
| Dref-RA | 2872 | CG5838-RA | 345..2474 | 17..2146 | 10650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:56:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9965760..9966885 | 1142..17 | 5630 | 100 | Minus |
| 2L | 23513712 | 2L | 9964926..9965316 | 1825..1435 | 1955 | 100 | Minus |
| 2L | 23513712 | 2L | 9964545..9964868 | 2146..1823 | 1620 | 100 | Minus |
| 2L | 23513712 | 2L | 9965376..9965668 | 1435..1143 | 1465 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:56:17 has no hits.
BS23791.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-15 10:19:39 Download gff for
BS23791.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dref-RA | 571..2700 | 17..2146 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:05:23 Download gff for
BS23791.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dref-RA | 345..2474 | 17..2146 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:34:38 Download gff for
BS23791.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dref-RA | 345..2474 | 17..2146 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:34:38 Download gff for
BS23791.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9964545..9964867 | 1824..2146 | 100 | <- | Minus |
| 2L | 9964928..9965315 | 1436..1823 | 100 | <- | Minus |
| 2L | 9965376..9965668 | 1143..1435 | 100 | <- | Minus |
| 2L | 9965760..9966885 | 17..1142 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:05:23 Download gff for
BS23791.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9964545..9964867 | 1824..2146 | 100 | <- | Minus |
| arm_2L | 9964928..9965315 | 1436..1823 | 100 | <- | Minus |
| arm_2L | 9965376..9965668 | 1143..1435 | 100 | <- | Minus |
| arm_2L | 9965760..9966885 | 17..1142 | 100 | | Minus |
BS23791.pep Sequence
Translation from 16 to 2145
> BS23791.pep
MSEGVPASPVAIGELKYEDVSQLNFSKLYSPKMKSVYWRYFGFPSNDNNE
VITKQNVVCIKCHKVLTNHGNTTNLRAHLQHRHKDLFKELCQEHDIHVPP
RKTPRNVSHPPLSKRNVSSRRVKLEFINNRNHDNASDDELDEAAVATAAM
QAEEDASSQTMLYETMVPFTYDEAENLVEEEERLVMEPKYGRKRKVATPS
SALMHGRVIKHEEGGYAAVANIANLAEALTDIVIKDLRNVDSLYDAGFGE
FLRQVLGNSAAMPEPHKIDSLINEMHASKFLEIGEITRDFTSEKPFSLAF
EMWVNVEQRRFLSIFHHFLDEETHSVRGMLYATVEYNDYIVFDDLLTDFY
LANCTLAIINYDEEEDLLHTYLREKNIPISLCYVSVIDKCLRRVFEIEEV
ATLLEQVKDLMQRHSTEIASKVSEVPMPTYNEHFPWTLYETLKFFAESIS
WSEDMDHLVISAKTVTEALSALVIALDTLRGEDIPLCSMLSPITSKILIK
KLGIAEQDDPLMMNLKRTISSVLQAHVISNDNLTAAALLDPRFHRLTTID
NLERTVRMLTHKYNINFGGVGEGESNEVAATSSVVAIKSEPRVVDGSAPK
KLGLKLLFDSNEIPNPPKRDADSSVESDLKRYRNEVVVQLDESPIEWWLK
MGHIYGTLRDLASLYHSVPGVVTLSFKKALRDQIYDFNKRFMLTGSHIDA
ILFLHHHNN*
BS23791.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:11:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dref-PB | 709 | CG5838-PB | 1..709 | 1..709 | 3668 | 100 | Plus |
| Dref-PA | 709 | CG5838-PA | 1..709 | 1..709 | 3668 | 100 | Plus |
