BS23796.complete Sequence
2417 bp assembled on 2011-09-21
GenBank Submission: KX802486
> BS23796.complete
GAAGTTATCAGTCGACATGTTGATCCGTTGGAAGAGTAAGGACAAGAGCG
CCTCCTCCAACCAGAGCGTCGGCGGCAGCAGCAGCTCCTCGTCGAAGAAG
AAGCGCAAGGGTAGAGAGGGCGAAGAAGACTGGCAGAATGAGGCAAAGTC
GGGACGGCTTCCGTCGAATGAACAGGGTGGCGACGAAAGACGACGAGCCA
TGCGACGCGACGATCCACGACGACATACGCTCGGCGGCGATATGCTGGTC
TACGGCTCGCAGCATCCACACGCCCATCAGATGGCGCCCCAGCAACAGCG
GGCCATGGATCTGGAGATGAGTACGCGCGCGCAGAAGAACAAAAAGAACC
AGCCGATGCGCGGTTATGCGCCTGTTAACCAGGGACCGCTGTTCGACGAC
GATCCCGGCATCATGTCGGAGGTGGAAACGGCCAGCACCGGATTCCGGAG
GGGCGGCAAGCAGCGCTCCTCGCTCCCCGTGGTACGCACGCCCTCGAAAA
CTCTGGAACGACCGCTGGGCCTGGTCTTTCTGCAGTACCGCTCGGAGACG
AAGCGCGCCCTGCTGCCCAACGAGATCACTTCGATTGATACGGTGCGCGC
CCTGTTCGTACGCTCGTTTCCGCGCCAGTTGACCATGTCATATCTGGAGG
GGCCCAATGTGAAGATTTACATTCACGATGCCAGCAAGGATATGTTCTAC
GAGCTGGAGGACGTGCGCTCGCATCTGCGCGAGATCAGGGATCGCTCCGT
GCTGCGTCTCTTTGAGTCCACTGAGGTGGCAGCCCCGCCCCAGATTCTGC
CCGGCGGCCCTGGAATACCCCAACCCCTGCCGCAGGCGCAGGCCAATTGG
GATCAGGATCAGAGCTACTTCAGCGAGCCGGAGTTCGACTCGGACTACAA
GCACCAGCATATCCACAAATCAAAGATTGGCAAACAACCGGCGCCCTACT
ACGTGGGCTCATCGCAGACACTGCCGCGAGGCATGTACTCTTCAGAACGG
AACAAGGTGTCGATGGATGGATATACCAGTTCCCCGGAGCGCAGTAGCCG
CGGAAACTACGAGGAGCCATACTACAGCCAGTACGGAACGAGGGGCGCCG
TGGTGGCGCCCATTATCGACGAGGAGCAGAGCGATGGAACCATGACAGAG
GATCAGTACGCACTGTACGGCATAAAGGTGGGACCAGGACCCAACCGCCT
CACGCATCGCGGCAACCAGATCTACGATCCCACTAGGCCCGAAGACTTGC
ATCGGATTCGTGTGGAGCACATGGAAAGGCAGCTGGCCAACCTGACGGGA
CTAGTGCAGAAGGCCCTCGTTAACCAGAACCCCCAGATTGCCCCGCTGGC
CGTGCCCACTCTGGACCCAAACTATCTGGTCGTGCCGTCGCAGATGCAAG
CCAACGGCTCCGGGGATGAGCTGTACATTCGGGAGAAAGCTCCCAAGCTG
GGCAAAAACTCGTGCCAAAAATCCGTGTCCTTTGAGAAGTCCGTGTCATT
TAGCGATGACATACAGGGAATACCAAAGTCTCACAATCCCCTACATGCCG
CCGAAACGAAGCCAACCAAGCCGGCAATCAAGTCGTCCACTCTTCCACGC
ACCTCGTCCCAAGAGCGTGACCGACTAAAGCCTCCTCCGCCCCCCAAGCC
GATCGTGCTAGCCCAGACCGCTCATCCCAACTACCGGGCGGACATTGCCC
TGGCTCCTGAGGTGTACAACCATTTGCGCGGCCTGCAGAAGAAGGCCAAG
GACCTGCGCATGGAGGTGCGCACCCTGAGGCGCCTCTCGCAGGCCCAGGC
TGTTGCCGTGCGCGAAGACATCAAGGGAACCTTCATGCGGATTCGCGCTA
CTCTGCTGGCGAGCAGCGGCAGCTTCTGGGATCACCAGGGCGACCAGGAC
GCCACACGCATTTCGCGGGAGGAGGAGCTCTACAAGCAAGAAGTAATCCG
CCTGGAGAAGGACCTCAGCGACCTGGAGGGGTCTGTTGAGAACCTGCGCG
GCGAGGTCATTAACCGGCGAACACGCGTCAACATGACGGCCGTGGAAGAC
ATGGCTCTGGTGCTGAGCCGGGCAAGCAAAACCGTCGCCGAGCTGAAGCT
AAAGTTCCCATCCCTGTCGAATGGCTTGCGCTGCATCCTGTCTAACGAGA
TGGAGAAAGTGGTGCGAGAAGAAAAGTTCCTCAAAGAAGAGCCCGACCGT
TTGGAGTCGGCGCTACGTCGCTGCAAGAAGCTGACCGGCACACTGGTGAC
GCTCAAACGCTTGGCCAGCGTGCAGGAGCAACGGCTGCCGCCGAACGAGC
CGACTATTAGTGAGGAGACACCACGATCCGCGGACATCTCGGCGCCCGAC
AAGTTTAACTGGCGATGGAGTTCAAACTTCAAAGAGGCAATTACTGAGTA
AAAGCTTTCTAGACCAT
BS23796.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:54:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32809-RB | 2385 | CG32809-PB | 1..2385 | 17..2401 | 11925 | 100 | Plus |
| CG32809-RH | 2457 | CG32809-PH | 1..2378 | 17..2397 | 11825 | 99.9 | Plus |
| CG32809-RI | 3750 | CG32809-PI | 1..2337 | 17..2353 | 11685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:54:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32809-RB | 2636 | CG32809-RB | 218..2602 | 17..2401 | 11925 | 100 | Plus |
| CG32809-RH | 6806 | CG32809-RH | 518..2895 | 17..2397 | 11825 | 99.9 | Plus |
| CG32809-RI | 4653 | CG32809-RI | 218..2554 | 17..2353 | 11685 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:54:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1690200..1690810 | 925..315 | 3055 | 100 | Minus |
| X | 23542271 | X | 1681808..1682272 | 2076..1612 | 2325 | 100 | Minus |
| X | 23542271 | X | 1681573..1681757 | 2259..2075 | 925 | 100 | Minus |
| X | 23542271 | X | 1683097..1683262 | 1400..1235 | 830 | 100 | Minus |
| X | 23542271 | X | 1690868..1691013 | 321..176 | 715 | 99.3 | Minus |
| X | 23542271 | X | 1684631..1684746 | 1131..1016 | 580 | 100 | Minus |
| X | 23542271 | X | 1684452..1684559 | 1237..1130 | 540 | 100 | Minus |
| X | 23542271 | X | 1691207..1691312 | 122..17 | 530 | 100 | Minus |
| X | 23542271 | X | 1681400..1681494 | 2353..2259 | 475 | 100 | Minus |
| X | 23542271 | X | 1685647..1685739 | 1016..924 | 465 | 100 | Minus |
| X | 23542271 | X | 1682698..1682781 | 1550..1467 | 420 | 100 | Minus |
| X | 23542271 | X | 1682863..1682930 | 1466..1399 | 340 | 100 | Minus |
| X | 23542271 | X | 1682367..1682430 | 1613..1550 | 320 | 100 | Minus |
| X | 23542271 | X | 1691078..1691134 | 178..122 | 285 | 100 | Minus |
| X | 23542271 | X | 1680061..1680110 | 2401..2352 | 250 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:54:34 has no hits.
BS23796.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 17:57:32 Download gff for
BS23796.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32809-RB | 223..2600 | 22..2399 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:35:22 Download gff for
BS23796.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32809-RB | 223..2600 | 22..2399 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:29:27 Download gff for
BS23796.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32809-RB | 223..2600 | 22..2399 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:29:27 Download gff for
BS23796.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1680063..1680108 | 2354..2399 | 100 | <- | Minus |
| X | 1681400..1681493 | 2260..2353 | 100 | <- | Minus |
| X | 1681573..1681755 | 2077..2259 | 100 | <- | Minus |
| X | 1681808..1682270 | 1614..2076 | 100 | <- | Minus |
| X | 1682367..1682429 | 1551..1613 | 100 | <- | Minus |
| X | 1682698..1682781 | 1467..1550 | 100 | <- | Minus |
| X | 1682863..1682928 | 1401..1466 | 100 | <- | Minus |
| X | 1683097..1683260 | 1237..1400 | 100 | <- | Minus |
| X | 1684453..1684557 | 1132..1236 | 100 | <- | Minus |
| X | 1684631..1684745 | 1017..1131 | 100 | <- | Minus |
| X | 1685647..1685737 | 926..1016 | 100 | <- | Minus |
| X | 1690200..1690808 | 317..925 | 100 | <- | Minus |
| X | 1690873..1691012 | 177..316 | 100 | <- | Minus |
| X | 1691080..1691133 | 123..176 | 100 | <- | Minus |
| X | 1691207..1691307 | 22..122 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:35:22 Download gff for
BS23796.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1578486..1578590 | 1132..1236 | 100 | <- | Minus |
| arm_X | 1578664..1578778 | 1017..1131 | 100 | <- | Minus |
| arm_X | 1579680..1579770 | 926..1016 | 100 | <- | Minus |
| arm_X | 1574096..1574141 | 2354..2399 | 100 | <- | Minus |
| arm_X | 1575433..1575526 | 2260..2353 | 100 | <- | Minus |
| arm_X | 1575606..1575788 | 2077..2259 | 100 | <- | Minus |
| arm_X | 1575841..1576303 | 1614..2076 | 100 | <- | Minus |
| arm_X | 1576400..1576462 | 1551..1613 | 100 | <- | Minus |
| arm_X | 1576731..1576814 | 1467..1550 | 100 | <- | Minus |
| arm_X | 1576896..1576961 | 1401..1466 | 100 | <- | Minus |
| arm_X | 1577130..1577293 | 1237..1400 | 100 | <- | Minus |
| arm_X | 1584233..1584841 | 317..925 | 100 | <- | Minus |
| arm_X | 1584906..1585045 | 177..316 | 100 | <- | Minus |
| arm_X | 1585113..1585166 | 123..176 | 100 | <- | Minus |
| arm_X | 1585240..1585340 | 22..122 | 100 | | Minus |
BS23796.pep Sequence
Translation from 16 to 2400
> BS23796.pep
MLIRWKSKDKSASSNQSVGGSSSSSSKKKRKGREGEEDWQNEAKSGRLPS
NEQGGDERRRAMRRDDPRRHTLGGDMLVYGSQHPHAHQMAPQQQRAMDLE
MSTRAQKNKKNQPMRGYAPVNQGPLFDDDPGIMSEVETASTGFRRGGKQR
SSLPVVRTPSKTLERPLGLVFLQYRSETKRALLPNEITSIDTVRALFVRS
FPRQLTMSYLEGPNVKIYIHDASKDMFYELEDVRSHLREIRDRSVLRLFE
STEVAAPPQILPGGPGIPQPLPQAQANWDQDQSYFSEPEFDSDYKHQHIH
KSKIGKQPAPYYVGSSQTLPRGMYSSERNKVSMDGYTSSPERSSRGNYEE
PYYSQYGTRGAVVAPIIDEEQSDGTMTEDQYALYGIKVGPGPNRLTHRGN
QIYDPTRPEDLHRIRVEHMERQLANLTGLVQKALVNQNPQIAPLAVPTLD
PNYLVVPSQMQANGSGDELYIREKAPKLGKNSCQKSVSFEKSVSFSDDIQ
GIPKSHNPLHAAETKPTKPAIKSSTLPRTSSQERDRLKPPPPPKPIVLAQ
TAHPNYRADIALAPEVYNHLRGLQKKAKDLRMEVRTLRRLSQAQAVAVRE
DIKGTFMRIRATLLASSGSFWDHQGDQDATRISREEELYKQEVIRLEKDL
SDLEGSVENLRGEVINRRTRVNMTAVEDMALVLSRASKTVAELKLKFPSL
SNGLRCILSNEMEKVVREEKFLKEEPDRLESALRRCKKLTGTLVTLKRLA
SVQEQRLPPNEPTISEETPRSADISAPDKFNWRWSSNFKEAITE*
BS23796.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:14:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32809-PB | 794 | CG32809-PB | 1..794 | 1..794 | 4102 | 100 | Plus |
| CG32809-PH | 818 | CG32809-PH | 1..793 | 1..794 | 4082 | 99.7 | Plus |
| CG32809-PI | 1249 | CG32809-PI | 1..779 | 1..779 | 4015 | 100 | Plus |
| CG32809-PD | 1234 | CG32809-PD | 1..779 | 1..779 | 4015 | 100 | Plus |
| CG32809-PE | 1233 | CG32809-PE | 1..778 | 1..779 | 3998 | 99.9 | Plus |
