BS23808.complete Sequence
437 bp assembled on 2011-01-27
GenBank Submission: KX802705
> BS23808.complete
GAAGTTATCAGTCGACATGTTCAAGTTTGTGATGATTCTCGCCGTTGTGG
GAGTGGCTACCGCCCTAGCCCCAGTTTCCCGCTCCGATGATGTACACGCT
GATGTCCTTTCCCGATCGGACGACGTTCGTGCCGACGGATTCGACTCCAG
CCTGCACACCTCAAACGGAATCGAGCAGGCCGCCAGCGGTGATGCCCATG
GCAACATCCACGGCAACTTCGGCTGGATCTCACCCGAGGGCGAGCACGTT
GAGGTAAAGTACGTCGCGAATGAAAACGGATACCAGCCCTCGGGAGCCTG
GATCCCCACTCCTCCTCCAATCCCAGAGGCCATCGCCCGCGCCGTTGCCT
GGCTGGAGTCTCACCCCCCAGCACCCGAGCACCCCCGTCATCACTAGAAG
CTTTCTAGACCATTCGTTTGGCGCGCGTTTTTTTTTA
BS23808.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:49:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lcp2-RB | 381 | CG8697-PB | 1..381 | 17..397 | 1905 | 100 | Plus |
| Lcp2-RA | 381 | CG8697-PA | 1..381 | 17..397 | 1905 | 100 | Plus |
| Lcp1-RB | 393 | CG11650-PB | 75..393 | 79..397 | 1310 | 94 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:49:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lcp2-RB | 927 | CG8697-RB | 243..633 | 7..397 | 1925 | 99.5 | Plus |
| Lcp2-RA | 540 | CG8697-RA | 33..423 | 7..397 | 1925 | 99.5 | Plus |
| Lcp1-RB | 1065 | CG11650-RB | 117..437 | 79..399 | 1320 | 94.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:49:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8434091..8434459 | 397..29 | 1845 | 100 | Minus |
| 2R | 25286936 | 2R | 8430743..8431063 | 399..79 | 1320 | 94.1 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:49:09 has no hits.
BS23808.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:05:06 Download gff for
BS23808.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lcp2-RA | 48..427 | 22..402 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:45:19 Download gff for
BS23808.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lcp2-RA | 48..427 | 22..402 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:04:25 Download gff for
BS23808.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lcp2-RA | 48..427 | 22..402 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:04:25 Download gff for
BS23808.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8434087..8434462 | 22..402 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:45:19 Download gff for
BS23808.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4321592..4321967 | 22..402 | 98 | | Minus |
BS23808.pep Sequence
Translation from 16 to 396
> BS23808.pep
MFKFVMILAVVGVATALAPVSRSDDVHADVLSRSDDVRADGFDSSLHTSN
GIEQAASGDAHGNIHGNFGWISPEGEHVEVKYVANENGYQPSGAWIPTPP
PIPEAIARAVAWLESHPPAPEHPRHH*
BS23808.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:52:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lcp2-PB | 126 | CG8697-PB | 1..126 | 1..126 | 679 | 100 | Plus |
| Lcp2-PA | 126 | CG8697-PA | 1..126 | 1..126 | 679 | 100 | Plus |
| Lcp1-PB | 130 | CG11650-PB | 1..130 | 1..126 | 624 | 90 | Plus |
| Lcp1-PA | 130 | CG11650-PA | 1..130 | 1..126 | 624 | 90 | Plus |
| Lcp4-PB | 112 | CG2044-PB | 1..109 | 1..117 | 298 | 48.7 | Plus |
