BS23809.complete Sequence
1298 bp assembled on 2011-02-07
GenBank Submission: KX803443
> BS23809.complete
GAAGTTATCAGTCGACATGAGGCTCAAATCGGGAGTGCTTTCGCTGCTCC
TGCTGACCACCTTCTTGGCCCTGGGCGAGTGCTTTTGGCCATTTAGCAAA
TGGCATGGAAGAAATGATAATCCTTCTGCCCCCCCTGAACCCAAGCTGTC
GCCAGTGATATTCGTACCCGGTGACGGAGGCTCCCAAATGGATGCTCGGC
TAAATAAGCCCAACTCTCCCTATTTAATTTGCCAAAAGACCCACGATTGG
TACAACCTGTGGCTGGATCTGGAGCAGTTGGTCATCCCCATGGTCTACTG
TTGGATAGACAATGTCAAGCTGTACTACGACAAGGTCACGAGGACCACCC
ACAACACTCCTGGTGTGGAGACGAGGATACCCGGCTGGGGCAATCCCGAG
GTGGTCGAGTGGATCGATCCCACCAAGAACAGCGCCGGAGCCTACTTCAA
GGATATAGCCAATGAGCTGGTGAAACTTGGATATATTCGCAAACAAAATA
TTCATGGAGCACCCTATGACTTCCGCAAAGCGCCAAATGAGAACCAACAG
TTCTTCATCGATCTCAAGCAGCTGGTGGAGGACTCCTATGAGGCCAACAA
TCAGTCGGCTGTGACCTTCATCTCGCACAGCATGGGCAGTCTCATGACCC
TGGTTTTCTTGCAGGAGCAAACCCTCCAATGGAAGGCGAAATACGTGAAG
CGCATGATCAGCCTGGCGGGAGTTTGGGCGGGAAGTTTTAAGGCTGTGAA
AGTGTTTGCCATGGGCGATGATCTCGACTCGTTCGCCCTGAGTGCCAAGA
TCCTCAAGGCGGAACAGATAACACACCCATCCACGGCCTGGTTGCTGCCC
TCGCCACTGTTTTGGAAGCCATCCGAGGTGCTCGCCATGACTCCAAGCAG
AAACTATACGATGGCACAGCTGGAAGAGTTCTTCAAAGACCTCGACTACA
TGACGGGCTGGGAAATGCGCAAGGACACGATTCGGTACAACCGAAACTTC
GATCCACCGAATGTGGAACTGCACTGTCTCTATGGCGAAGGCATCGACAC
GGTCGAGAGACTGCAGTACAAGAAATCGGACATTAGTGGGGAAACGCCCA
AGTTGATAATGGGTCTCGGCGACGGCACCGTTAACCAGCGTTCTCTGCGA
GCCTGCAAATATTGGGCGGGCTATTCTAAAGCGCCTATAAACACGCTCGC
TCTCCAGAACGTGGACCACTTGCACATCCTGTCCAATCCGGACGTCCTCA
AATATATCCGCACTGTCATGCAGCAGCCGTAAAAGCTTTCTAGACCAT
BS23809.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:21:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18858-RB | 1266 | CG18858-PB | 1..1266 | 17..1282 | 6330 | 100 | Plus |
| CG18858-RA | 1266 | CG18858-PA | 1..1266 | 17..1282 | 6330 | 100 | Plus |
| CG31683-RB | 1266 | CG31683-PB | 1..1266 | 17..1282 | 6300 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:21:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18858-RB | 2029 | CG18858-RB | 431..1696 | 17..1282 | 6330 | 100 | Plus |
| CG18858-RA | 1817 | CG18858-RA | 431..1696 | 17..1282 | 6330 | 100 | Plus |
| CG31683-RB | 1823 | CG31683-RB | 437..1702 | 17..1282 | 6300 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:21:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20457468..20457994 | 1059..533 | 2620 | 99.8 | Minus |
| 2L | 23513712 | 2L | 20448351..20448873 | 1059..537 | 2600 | 99.8 | Minus |
| 2L | 23513712 | 2L | 20458054..20458431 | 541..164 | 1875 | 99.7 | Minus |
| 2L | 23513712 | 2L | 20448937..20449314 | 541..164 | 1860 | 99.5 | Minus |
| 2L | 23513712 | 2L | 20448063..20448287 | 1282..1058 | 1125 | 100 | Minus |
| 2L | 23513712 | 2L | 20457180..20457404 | 1282..1058 | 1125 | 100 | Minus |
| 2L | 23513712 | 2L | 20449381..20449528 | 164..17 | 740 | 100 | Minus |
| 2L | 23513712 | 2L | 20458498..20458645 | 164..17 | 740 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:21:52 has no hits.
BS23809.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-14 14:32:59 Download gff for
BS23809.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18858-RA | 438..1701 | 17..1280 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:52:02 Download gff for
BS23809.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18858-RA | 431..1694 | 17..1280 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:23:55 Download gff for
BS23809.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18858-RA | 431..1694 | 17..1280 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:23:55 Download gff for
BS23809.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20457182..20457402 | 1060..1280 | 100 | <- | Minus |
| 2L | 20457468..20457990 | 537..1059 | 100 | <- | Minus |
| 2L | 20458059..20458430 | 165..536 | 100 | <- | Minus |
| 2L | 20458498..20458645 | 17..164 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:52:02 Download gff for
BS23809.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20457182..20457402 | 1060..1280 | 100 | <- | Minus |
| arm_2L | 20457468..20457990 | 537..1059 | 100 | <- | Minus |
| arm_2L | 20458059..20458430 | 165..536 | 100 | <- | Minus |
| arm_2L | 20458498..20458645 | 17..164 | 100 | | Minus |
BS23809.pep Sequence
Translation from 16 to 1281
> BS23809.pep
MRLKSGVLSLLLLTTFLALGECFWPFSKWHGRNDNPSAPPEPKLSPVIFV
PGDGGSQMDARLNKPNSPYLICQKTHDWYNLWLDLEQLVIPMVYCWIDNV
KLYYDKVTRTTHNTPGVETRIPGWGNPEVVEWIDPTKNSAGAYFKDIANE
LVKLGYIRKQNIHGAPYDFRKAPNENQQFFIDLKQLVEDSYEANNQSAVT
FISHSMGSLMTLVFLQEQTLQWKAKYVKRMISLAGVWAGSFKAVKVFAMG
DDLDSFALSAKILKAEQITHPSTAWLLPSPLFWKPSEVLAMTPSRNYTMA
QLEEFFKDLDYMTGWEMRKDTIRYNRNFDPPNVELHCLYGEGIDTVERLQ
YKKSDISGETPKLIMGLGDGTVNQRSLRACKYWAGYSKAPINTLALQNVD
HLHILSNPDVLKYIRTVMQQP*
BS23809.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:08:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18858-PB | 421 | CG18858-PB | 1..421 | 1..421 | 2266 | 100 | Plus |
| CG18858-PA | 421 | CG18858-PA | 1..421 | 1..421 | 2266 | 100 | Plus |
| CG31683-PB | 421 | CG31683-PB | 1..421 | 1..421 | 2259 | 99.5 | Plus |
| CG31683-PA | 421 | CG31683-PA | 1..421 | 1..421 | 2259 | 99.5 | Plus |
