BS23820.complete Sequence
1379 bp assembled on 2011-02-07
GenBank Submission: KX806157
> BS23820.complete
GAAGTTATCAGTCGACATGTCGCAACAGCGCTCCACAGAGCAGATTGCAG
CTAGCAACAACAACACCAGCGATGTAATAGCGCTGGACGACGACGAGGAT
ACGGATGTGCAATTCGTTGCAGCTCTGCGTCCCACCGCACCAGTCATCGA
TCTTTGCGTCTCGCCCTCCACTTCTGCTGCTGCTGCTGCGGCGGCGGCAG
CTGCAGCCCACTCAGGAGGCGGAAGTGGCGAGGATCCGGCGGTTGGATCC
GCATCTGGAGCTGCTGCTTCGGATACCGATTCACTTGCTTCTTCGCCTGA
CGAAGGAGCGTTAGCCACCGGTGTGGATGCAGCGGCAGCCGTTTCTGGCG
AAGATTCCCCCTCTGCAGCGGCCGCTGCCTTGGAGTGTCCCATCTGTTTG
CAAACCTGCATCCACCCAGCTCGTCTCCCCTGTGGCCACATCTTCTGCTT
TTTGTGCGTGAAGGGTGTTGCTTATAAGAACCGCCGTTGTGCTATGTGCC
GTCGCGAGATTCCCGCCGAGTTCCTGGACCATCCCCAGCTGGTGAATGGC
ATTGAGGACATCTGCACCACTCGCGCGACCGAGGACGGCTTCCAGTGGTA
TTACGAGGGAAGAAACGGTTGGTGGCAGTACGATGACCGCACTAGTCAGG
ACATCGAAGATGCCTTTAAGAAGGGCGACAAATCCTGTACAATTTTGGTA
GCCGGCTACGTCTACATTGTGGACTTGGAGCAGCTAGTCCAGCAGCGCCA
GAATGAGCCCACTCGCTGCCGGAGGGTTAAGCGAGACCTAGCCACCATAC
CCAAAAAGGGGGTGGCCGGTCTGCGGATCGAAGGCAACCAGGTGACCAGC
GACACCGTCTTCAGCAGGCCAACCAACACAGCCAATCCAACCACCGTGGC
AGCAGCTGCCTCCAGTTTCATATCCACCATAGCAGCCACAGATGCGGCCA
TTAGAATCGCTAGCGACATAATAGGCTCAACGCTGGCTCATGCAGATGAA
CTAACTCGGGGACTGACGGCTAGCAATCTCAACGATGATCTCAGCAGCAG
CGGTGAGCAATCCAACTCCACAAATTCAAACGATGCAGGGCGCTCGCCTG
CCTCCTCGCCTGCCTCAAGTTCCATGCAGGATCTGATCACGCGTGACCTG
AGGAACACCCAACAGGTGATTGCCCACAACCAGCACACCATTGATCTCTT
CGAGCAGGCCTTGAACGACTTCCAGGCGCTGGCCATGCGCAACTATGTTG
ACTCCAGCGATGAGGAGAACAACGACCAGGATCAGGAGCATGAGCTGCGG
GAACGGGAGCAGCTGGAGGCGGGCGAGCAGCCACAGTCCAACGATAATCC
CCAGAGATTTTAGAAGCTTTCTAGACCAT
BS23820.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:20:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8786-RG | 1347 | CG8786-PG | 1..1347 | 17..1363 | 6735 | 100 | Plus |
| CG8786-RC | 1347 | CG8786-PC | 1..1347 | 17..1363 | 6735 | 100 | Plus |
| CG8786-RB | 1131 | CG8786-PB | 1..1036 | 17..1052 | 5180 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:20:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8786-RG | 3862 | CG8786-RG | 149..1498 | 16..1365 | 6750 | 100 | Plus |
| CG8786-RC | 1667 | CG8786-RC | 149..1498 | 16..1365 | 6750 | 100 | Plus |
| CG8786-RB | 1963 | CG8786-RB | 149..1185 | 16..1052 | 5185 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:20:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19639571..19640319 | 1365..617 | 3745 | 100 | Minus |
| 3L | 28110227 | 3L | 19642352..19642668 | 332..16 | 1585 | 100 | Minus |
| 3L | 28110227 | 3L | 19641063..19641220 | 619..462 | 790 | 100 | Minus |
| 3L | 28110227 | 3L | 19641893..19642026 | 464..331 | 670 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 22:20:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2467 | 340..175 | 112 | 53 | Minus |
BS23820.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-07 14:20:19 Download gff for
BS23820.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8786-RC | 148..1494 | 17..1363 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:54:53 Download gff for
BS23820.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8786-RC | 150..1496 | 17..1363 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:58:13 Download gff for
BS23820.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8786-RC | 150..1496 | 17..1363 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:58:13 Download gff for
BS23820.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19639573..19640318 | 618..1363 | 100 | <- | Minus |
| 3L | 19641065..19641218 | 464..617 | 100 | <- | Minus |
| 3L | 19641894..19642024 | 333..463 | 100 | <- | Minus |
| 3L | 19642352..19642667 | 17..332 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:54:53 Download gff for
BS23820.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19632673..19633418 | 618..1363 | 100 | <- | Minus |
| arm_3L | 19634165..19634318 | 464..617 | 100 | <- | Minus |
| arm_3L | 19634994..19635124 | 333..463 | 100 | <- | Minus |
| arm_3L | 19635452..19635767 | 17..332 | 100 | | Minus |
BS23820.pep Sequence
Translation from 16 to 1362
> BS23820.pep
MSQQRSTEQIAASNNNTSDVIALDDDEDTDVQFVAALRPTAPVIDLCVSP
STSAAAAAAAAAAAHSGGGSGEDPAVGSASGAAASDTDSLASSPDEGALA
TGVDAAAAVSGEDSPSAAAAALECPICLQTCIHPARLPCGHIFCFLCVKG
VAYKNRRCAMCRREIPAEFLDHPQLVNGIEDICTTRATEDGFQWYYEGRN
GWWQYDDRTSQDIEDAFKKGDKSCTILVAGYVYIVDLEQLVQQRQNEPTR
CRRVKRDLATIPKKGVAGLRIEGNQVTSDTVFSRPTNTANPTTVAAAASS
FISTIAATDAAIRIASDIIGSTLAHADELTRGLTASNLNDDLSSSGEQSN
STNSNDAGRSPASSPASSSMQDLITRDLRNTQQVIAHNQHTIDLFEQALN
DFQALAMRNYVDSSDEENNDQDQEHELREREQLEAGEQPQSNDNPQRF*
BS23820.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:04:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8786-PG | 448 | CG8786-PG | 1..448 | 1..448 | 2300 | 100 | Plus |
| CG8786-PC | 448 | CG8786-PC | 1..448 | 1..448 | 2300 | 100 | Plus |
| CG8786-PB | 376 | CG8786-PB | 1..352 | 1..352 | 1772 | 98.6 | Plus |
| CG8786-PF | 365 | CG8786-PF | 1..218 | 1..217 | 1096 | 96.8 | Plus |
