BS23827.complete Sequence
797 bp assembled on 2011-01-27
GenBank Submission: KX805652
> BS23827.complete
GAAGTTATCAGTCGACATGAGTCCGGTTCAGTCATATTCACACAGTCGAC
TACTCCTGCTCGTGGTCATCGTGACCTTGGGCGTGGTCCAATCCAGTCGA
CTGCCGGCGGAGGTGGGCTCCCAGCCACACAGCATCTCACTGCGTCGGAA
TGGCGTCCATGTGTGCGGAGGAGCTTTGATCCGTGAAAAGTGGATCCTCA
CCGCAGCCCATTGCGTCAGTTTGGGCGGTGGACAGCAGAGCTACCCAGCT
AAATCCTACAATGTGCGAGTGGGCAGCATTCAGCGACTGACCGGTGGTCA
ACTGGTGCCTCTGTCCAAGATCATAATCCACACGAACTACTCCAGTTCGG
ATGCAGTTGGCTCTAATGACTTGGCCTTGCTGGAGCTGGAAACGTCGGTG
GTCCTGAATGCGAATACGAATCCGATTGATTTGGCCACCGAGCGACCGGC
GGCGGGCTCCCAGATTATCTTCTCCGGCTGGGGATCCAGCCAGGTGGACG
GATCTCTCAGTCATGTCCTCCAGGTGGCCACCAGACAGAGCCTGAGTGCG
TCCGATTGCCAAACGGAGCTGTACCTGCAGCAGGAGGATCTGCTCTGTTT
GTCCCCGGTGGACGAGGACTTCGCCGGACTCTGTTCCGGTGATGCCGGAG
CTCCGGCGTCTTACAACAACCAATTGGTGGGCATTGCCGCCTTCTTTGTG
AGCGGATGTGGTTCCGAGCAGCCCGATGGCTACGTGGATGTGACCCAGCA
TCTGGAGTGGATTAACGAAAACGCTGTTTAAAAGCTTTCTAGACCAT
BS23827.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:49:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4653-RA | 765 | CG4653-PA | 1..765 | 17..781 | 3825 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:49:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4653-RA | 895 | CG4653-RA | 7..773 | 16..782 | 3835 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:49:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16704613..16705156 | 239..782 | 2720 | 100 | Plus |
| X | 23542271 | X | 16704087..16704311 | 16..240 | 1125 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:49:45 has no hits.
BS23827.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:05:07 Download gff for
BS23827.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4653-RA | 1..763 | 17..779 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:45:35 Download gff for
BS23827.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4653-RA | 8..770 | 17..779 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:04:38 Download gff for
BS23827.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4653-RA | 8..770 | 17..779 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:04:38 Download gff for
BS23827.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16704088..16704311 | 17..240 | 100 | -> | Plus |
| X | 16704615..16705153 | 241..779 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:45:35 Download gff for
BS23827.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16598121..16598344 | 17..240 | 100 | -> | Plus |
| arm_X | 16598648..16599186 | 241..779 | 100 | | Plus |
BS23827.pep Sequence
Translation from 16 to 780
> BS23827.pep
MSPVQSYSHSRLLLLVVIVTLGVVQSSRLPAEVGSQPHSISLRRNGVHVC
GGALIREKWILTAAHCVSLGGGQQSYPAKSYNVRVGSIQRLTGGQLVPLS
KIIIHTNYSSSDAVGSNDLALLELETSVVLNANTNPIDLATERPAAGSQI
IFSGWGSSQVDGSLSHVLQVATRQSLSASDCQTELYLQQEDLLCLSPVDE
DFAGLCSGDAGAPASYNNQLVGIAAFFVSGCGSEQPDGYVDVTQHLEWIN
ENAV*
BS23827.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:52:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4653-PA | 254 | CG4653-PA | 1..254 | 1..254 | 1295 | 100 | Plus |
| CG1304-PA | 260 | CG1304-PA | 44..257 | 37..253 | 433 | 40.9 | Plus |
| Ser6-PA | 259 | CG2071-PA | 44..257 | 37..253 | 422 | 41.2 | Plus |
| CG9676-PA | 251 | CG9676-PA | 34..249 | 31..253 | 413 | 40.3 | Plus |
| CG32523-PA | 262 | CG32523-PA | 41..260 | 29..253 | 368 | 36.1 | Plus |
